miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 448 bits (226), Expect = e-125
Identities = 226/226 (100%)
Strand = Plus / Plus
Query: 1 agcgaagctcctatcattccaatgaagggcccttttcatgggtggttccgctgctcgttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 agcgaagctcctatcattccaatgaagggcccttttcatgggtggttccgctgctcgttc 68
Query: 61 atggttcccactatcctatctcatcatgtatgtgtgtatgtactctagagggcccgagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 atggttcccactatcctatctcatcatgtatgtgtgtatgtactctagagggcccgagaa 128
Query: 121 gagattcatgtggtcgtcagtctttgagataggcttgtggtttgcatgaccgaggagctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gagattcatgtggtcgtcagtctttgagataggcttgtggtttgcatgaccgaggagctg 188
Query: 181 caccgtccccttgctggccgctctttggattgaagggagctctgca 226
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 caccgtccccttgctggccgctctttggattgaagggagctctgca 234
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 165 bits (83), Expect = 3e-40
Identities = 86/87 (98%)
Strand = Plus / Plus
Query: 140 gtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggcc 199
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 137 gtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggcc 196
Query: 200 gctctttggattgaagggagctctgca 226
|||||||||||||||||||||||||||
Sbjct: 197 gctctttggattgaagggagctctgca 223
Score = 91.7 bits (46), Expect = 4e-18
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 44 ggttccgctgctcgttcatggttcccactatcctatctcatcatgt 89
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 ggttccgctgctcgttcatggttcccactatcctatctcatcatgt 98
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 95.6 bits (48), Expect = 3e-19
Identities = 76/84 (90%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 144 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgtcccctt-gctggccgct 202
||||||| |||||||||||||||||||||||||||||| ||||||||| | || |||||
Sbjct: 129 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 188
Query: 203 ctttggattgaagggagctctgca 226
|||||| ||||||||||||||||
Sbjct: 189 gtttggagtgaagggagctctgca 212
Score = 65.9 bits (33), Expect = 2e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 38 atgggtggttccgctgctcgttcatggttcccactatcctatctcatca 86
||||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 46 atgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 94
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 93.7 bits (47), Expect = 1e-18
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 144 ttgagataggcttgtggtttgcatgaccgaggagctgcaccgtcccc-ttgctggccgct 202
||||||| ||| ||||||||||||||||||||||||||| ||||||| ||| | |||||
Sbjct: 135 ttgagatgggcctgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgct 194
Query: 203 ctttggattgaagggagctctgc 225
| |||||||||||||||||||||
Sbjct: 195 cgttggattgaagggagctctgc 217
Score = 65.9 bits (33), Expect = 2e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 50 gctgctcgttcatggttcccactatcctatctcatca 86
||||||||||||||||||||||||||| |||||||||
Sbjct: 58 gctgctcgttcatggttcccactatcccatctcatca 94
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 89.7 bits (45), Expect = 2e-17
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 146 gagataggcttgtggtttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 205
|||||||||||||||||||||||||| |||||| | | | | |||||||| || |||||
Sbjct: 97 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 156
Query: 206 tggattgaagggagctctgca 226
|||||||||||||||||||||
Sbjct: 157 tggattgaagggagctctgca 177
Score = 54.0 bits (27), Expect = 9e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 50 gctgctcgttcatggttcccactatcctatctcat 84
|||||| |||||||||||||||||| |||||||||
Sbjct: 55 gctgcttgttcatggttcccactattctatctcat 89
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 201 ctctttggattgaagggagctctgca 226
||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgca 264
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 202 tctttggattgaagggagctct 223
||||||||||||||||||||||
Sbjct: 174 tctttggattgaagggagctct 195
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 202 tctttggattgaagggagctct 223
||||||||||||||||||||||
Sbjct: 170 tctttggattgaagggagctct 191
