miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001681.1/9004-8807 4558:Sorghum bicolor
(sorghum)
Length = 198
Score = 337 bits (170), Expect = 5e-92
Identities = 170/170 (100%)
Strand = Plus / Plus
Query: 63 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatg 74
Query: 123 cctctctggtgcagcaatgactgatgctcacctgcacttgcatgggtgtgcatgacccgg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75 cctctctggtgcagcaatgactgatgctcacctgcacttgcatgggtgtgcatgacccgg 134
Query: 183 gagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 232
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 184
>RF00638;MIR159;EU968889.1/70-269 4577:Zea mays
Length = 200
Score = 272 bits (137), Expect = 2e-72
Identities = 164/172 (95%), Gaps = 2/172 (1%)
Strand = Plus / Plus
Query: 63 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatg 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggata 74
Query: 123 cctctctggtgcagcaatgactgatgctcac--ctgcacttgcatgggtgtgcatgaccc 180
||||||||||||||||||| | | ||||||| |||||||||||||||||||||||||||
Sbjct: 75 cctctctggtgcagcaatggccgctgctcacctctgcacttgcatgggtgtgcatgaccc 134
Query: 181 gggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 232
||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gggagatgagcccgccatcatctttccctcgtgcttggattgaagggagctc 186
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 127 bits (64), Expect = 8e-29
Identities = 144/170 (84%), Gaps = 8/170 (4%)
Strand = Plus / Plus
Query: 63 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatg 122
|||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||
Sbjct: 15 gctcccttcgatccaatccaggagaggaagtggtaggatgcagctgccggttcatggata 74
Query: 123 cctctctggtgcagcaatgactgatgctcacctgcacttgcatgggtgtgcatgacccgg 182
||||| ||||| || | | ||| ||||||||||||||| ||||||||||||
Sbjct: 75 cctctgcagtgca----tgtcgtaggct----tgcacttgcatgggtttgcatgacccgg 126
Query: 183 gagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 232
|||||||||||||||| |||| | || |||||||||||||||||||||
Sbjct: 127 gagatgaacccaccattgtcttcctcttatgcttggattgaagggagctc 176
>RF00638;MIR159;AP008207.1/6555244-6555046 39947:Oryza sativa
Japonica Group
Length = 199
Score = 101 bits (51), Expect = 5e-21
Identities = 142/171 (83%), Gaps = 1/171 (0%)
Strand = Plus / Plus
Query: 63 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatg 122
||||| ||||||||||| |||||| ||||||||| || ||||||||||| |||||||||
Sbjct: 15 gctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatggata 74
Query: 123 cctctctggtgca-gcaatgactgatgctcacctgcacttgcatgggtgtgcatgacccg 181
||||| ||||| | | | || || ||||||||||||||||| |||||||||||
Sbjct: 75 cctctggagtgcatggcagcaatgctgtaggcctgcacttgcatgggtttgcatgacccg 134
Query: 182 ggagatgaacccaccatcatctttccctcgtgcttggattgaagggagctc 232
||||||||||||||||| |||| | || || ||||||||||||||||||
Sbjct: 135 ggagatgaacccaccattgtcttcctctattgattggattgaagggagctc 185
>RF00638;MIR159;EU869145.1/283-93 39946:Oryza sativa Indica Group
Length = 191
Score = 81.8 bits (41), Expect = 4e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 63 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatg 122
||||| ||||||||||| |||||| ||||||||| || |||||||||||||||||||||
Sbjct: 15 gctcctttcgatccaattcaggagaggaagtggtgggatgcagctgccggttcatggata 74
Query: 123 cctct 127
|||||
Sbjct: 75 cctct 79
Score = 63.9 bits (32), Expect = 1e-09
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 153 cctgcacttgcatgggtgtgcatgacccgggagatgaacc 192
||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 98 cctgcacttgcatgggtttgcatgacctgggagatgaacc 137
>RF00638;MIR159;EU869146.1/267-75 39946:Oryza sativa Indica Group
Length = 193
Score = 77.8 bits (39), Expect = 7e-14
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 69 ttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatgcctct 127
||||||||||| |||||| ||||||||| || ||||||||||||||||||||| |||||
Sbjct: 22 ttcgatccaattcaggagaggaagtggtaggatgcagctgccggttcatggatacctct 80
>RF00638;MIR159;EU869143.1/162-369 39946:Oryza sativa Indica Group
Length = 208
Score = 73.8 bits (37), Expect = 1e-12
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 63 gctcccttcgatccaatccaggaggggaagtggtcggttgcagctgccggttcatggatg 122
||||| ||||||||||| |||||| ||||||||| || ||||||||||| |||||||||
Sbjct: 15 gctcctttcgatccaattcaggagaggaagtggtaggatgcagctgccgattcatggata 74
Query: 123 cctct 127
|||||
Sbjct: 75 cctct 79
