miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54405_sbi-miR160b:pmrd
Length = 82
Score = 163 bits (82), Expect = 2e-41
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccacacatgtagcccaacccgtggcgtgattggatgctgtgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccacacatgtagcccaacccgtggcgtgattggatgctgtgg 60
Query: 61 gtggcgtgcaaggagccaagca 82
||||||||||||||||||||||
Sbjct: 61 gtggcgtgcaaggagccaagca 82
>54947_zma-miR160m:pmrd
Length = 81
Score = 147 bits (74), Expect = 1e-36
Identities = 81/82 (98%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccacacatgtagcccaacccgtggcgtgattggatgctgtgg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccacacatgtagcc-aacccgtggcgtgattggatgctgtgg 59
Query: 61 gtggcgtgcaaggagccaagca 82
||||||||||||||||||||||
Sbjct: 60 gtggcgtgcaaggagccaagca 81
>54939_zma-miR160b:pmrd
Length = 121
Score = 147 bits (74), Expect = 1e-36
Identities = 81/82 (98%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccacacatgtagcccaacccgtggcgtgattggatgctgtgg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgccacacatgtagcc-aacccgtggcgtgattggatgctgtgg 79
Query: 61 gtggcgtgcaaggagccaagca 82
||||||||||||||||||||||
Sbjct: 80 gtggcgtgcaaggagccaagca 101
>48832_osa-miR160m:pmrd
Length = 82
Score = 123 bits (62), Expect = 2e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccacacatgtagcccaacccgtggcgtgattggatgctgtgg 60
|||||||||||||||||||||| |||||||||||| || ||| ||| |||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactcatgtagcccaatccatggtgtgtttggatgctgtgg 60
Query: 61 gtggcgtgcaaggagccaagca 82
||||||||||||||||||||||
Sbjct: 61 gtggcgtgcaaggagccaagca 82
>48827_osa-miR160b:pmrd
Length = 139
Score = 123 bits (62), Expect = 2e-29
Identities = 77/82 (93%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccacacatgtagcccaacccgtggcgtgattggatgctgtgg 60
|||||||||||||||||||||| |||||||||||| || ||| ||| |||||||||||||
Sbjct: 30 tgcctggctccctgtatgccactcatgtagcccaatccatggtgtgtttggatgctgtgg 89
Query: 61 gtggcgtgcaaggagccaagca 82
||||||||||||||||||||||
Sbjct: 90 gtggcgtgcaaggagccaagca 111
>54404_sbi-miR160a:pmrd
Length = 84
Score = 75.8 bits (38), Expect = 4e-15
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccacacatgtagcccaaccc 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccacacatgtagcccaaccc 38
>48826_osa-miR160a:pmrd
Length = 88
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccacacatgtagcccaaccc 38
|||||||||||||||||||||||||||||| |||||||
Sbjct: 4 tgcctggctccctgtatgccacacatgtagaccaaccc 41
>54945_zma-miR160h:pmrd
Length = 86
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccacacatgtagc 31
|||||||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccacacatgtagc 31
>54944_zma-miR160g:pmrd
Length = 86
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccacacatgtagc 31
|||||||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccacacatgtagc 31
>54938_zma-miR160a:pmrd
Length = 104
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccacacatgtagc 31
|||||||||||||||||||||||||||||||
Sbjct: 10 tgcctggctccctgtatgccacacatgtagc 40
>54780_vvi-miR160c:pmrd
Length = 106
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccacac 24
||||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccacac 34
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 59 gggtggcgtgcaaggagccaagca 82
||||||||||| ||||||||||||
Sbjct: 71 gggtggcgtgcgaggagccaagca 94
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccaca 23
|||||||||||||||||||||||
Sbjct: 12 tgcctggctccctgtatgccaca 34
Score = 42.1 bits (21), Expect = 6e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 46 gattggatgctgtgggtggcgtgcaaggagccaagca 82
|||||| ||||| |||||||||| ||||||||||||
Sbjct: 60 gattggctgctgccggtggcgtgcgaggagccaagca 96
>51611_ptc-miR160d:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccaca 23
|||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccaca 33
Score = 42.1 bits (21), Expect = 6e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 46 gattggatgctgtgggtggcgtgcaaggagccaagca 82
|||||| ||||| |||||||||| ||||||||||||
Sbjct: 59 gattggctgctgccggtggcgtgcgaggagccaagca 95
>51608_ptc-miR160a:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccaca 23
|||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccaca 33
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 60 ggtggcgtgcaaggagccaagca 82
|||||||||| ||||||||||||
Sbjct: 72 ggtggcgtgcgaggagccaagca 94
>51334_pga-miR160:pmrd
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccaca 23
|||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccaca 23
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccaca 23
|||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccaca 27
>46935_ath-miR160b:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccaca 23
|||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccaca 27
>54946_zma-miR160i:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 2 tgcctggctccctgtatgccac 23
>54942_zma-miR160e:pmrd
Length = 94
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 9 tgcctggctccctgtatgccac 30
>54941_zma-miR160d:pmrd
Length = 142
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgccac 42
>54940_zma-miR160c:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgccac 28
>54759_ttu-miR160a:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54675_tae-miR160:pmrd
Length = 148
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 22 tgcctggctccctgtatgccac 43
>54575_smo-miR160b:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgccac 34
>54408_sbi-miR160e:pmrd
Length = 95
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54407_sbi-miR160d:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54406_sbi-miR160c:pmrd
Length = 83
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>51364_ppt-miR160f:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
>51363_ppt-miR160e:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
>51359_ppt-miR160a:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>48833_osa-miR160n:pmrd
Length = 131
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>48829_osa-miR160d:pmrd
Length = 142
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 8 tgcctggctccctgtatgccac 29
>48828_osa-miR160c:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgccac 28
>48791_oba-miR160:pmrd
Length = 90
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 59 gggtggcgtgcaaggagccaagca 82
||||||||||| ||||||||||||
Sbjct: 64 gggtggcgtgcgaggagccaagca 87
>46936_ath-miR160c:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccac 26
>54783_vvi-miR160f:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54781_vvi-miR160d:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54574_smo-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54541_sly-miR160a:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 20 tgcctggctccctgtatgcca 40
>51610_ptc-miR160c:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51609_ptc-miR160b:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51367_ppt-miR160i:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 gcctggctccctgtatgccac 22
|||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgccac 51
>48704_mtr-miR160e:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48703_mtr-miR160d:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48702_mtr-miR160b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48658_hvv-miR160a:pmrd
Length = 344
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 324 tgcctggctccctgtatgcca 344
>48542_gma-miR160a:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcca 41
>48397_bra-miR160a:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 26 tgcctggctccctgtatgcca 46
>48396_bra-miR160a:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 26 tgcctggctccctgtatgcca 46
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
>46934_ath-miR160a:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
>46865_aqc-miR160b:pmrd
Length = 82
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgcca 21
