miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54407_sbi-miR160d:pmrd
Length = 100
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccactcgcttagctgccaacaactcatactacgttgttaacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactcgcttagctgccaacaactcatactacgttgttaacg 60
Query: 61 acgttggctctactgcggatggcgtgcgaggagccaagca 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acgttggctctactgcggatggcgtgcgaggagccaagca 100
>48833_osa-miR160n:pmrd
Length = 131
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 64 ttggctctactgcggatggcgtgcgaggagccaagca 100
|||||||||||||||||||||||||||||||||||||
Sbjct: 94 ttggctctactgcggatggcgtgcgaggagccaagca 130
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccactcgcttagctgccaa 37
|||||||||||||||||||||||||| ||||||||||
Sbjct: 1 tgcctggctccctgtatgccactcgcgtagctgccaa 37
>48829_osa-miR160d:pmrd
Length = 142
Score = 73.8 bits (37), Expect = 2e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 64 ttggctctactgcggatggcgtgcgaggagccaagca 100
|||||||||||||||||||||||||||||||||||||
Sbjct: 101 ttggctctactgcggatggcgtgcgaggagccaagca 137
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccactcgcttagctgccaa 37
|||||||||||||||||||||||||| ||||||||||
Sbjct: 8 tgcctggctccctgtatgccactcgcgtagctgccaa 44
>54675_tae-miR160:pmrd
Length = 148
Score = 69.9 bits (35), Expect = 3e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 62 cgttggctctactgcggatggcgtgcgaggagccaagca 100
|||||||||||| ||||||||||||||||||||||||||
Sbjct: 73 cgttggctctaccgcggatggcgtgcgaggagccaagca 111
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccactcgcttagctgccaac 38
|||||||||||||||||||||||||| |||||||||||
Sbjct: 22 tgcctggctccctgtatgccactcgcgtagctgccaac 59
>54941_zma-miR160d:pmrd
Length = 142
Score = 63.9 bits (32), Expect = 2e-11
Identities = 87/103 (84%), Gaps = 3/103 (2%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccactcgcttagctgccaacaactcatac-tacgttgttaac 59
|||||||||||||||||||||||||| | ||||||||| |||| | ||| || || |
Sbjct: 21 tgcctggctccctgtatgccactcgcatggctgccaactcatcatgcatacactgctagc 80
Query: 60 ga--cgttggctctactgcggatggcgtgcgaggagccaagca 100
| ||||||||| ||||||||||||||||| |||||||||||
Sbjct: 81 tagtcgttggctccactgcggatggcgtgcgtggagccaagca 123
>54946_zma-miR160i:pmrd
Length = 81
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccactcgc 26
||||||||||||||||||||||||||
Sbjct: 2 tgcctggctccctgtatgccactcgc 27
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 73 ctgcggatggcgtgcgaggagccaagca 100
|||||| |||||||||||| ||||||||
Sbjct: 53 ctgcggctggcgtgcgaggtgccaagca 80
>54942_zma-miR160e:pmrd
Length = 94
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccactcgc 26
||||||||||||||||||||||||||
Sbjct: 9 tgcctggctccctgtatgccactcgc 34
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 73 ctgcggatggcgtgcgaggagccaagca 100
|||||| |||||||||||| ||||||||
Sbjct: 59 ctgcggctggcgtgcgaggtgccaagca 86
>54408_sbi-miR160e:pmrd
Length = 95
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccactcgc 26
||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactcgc 26
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 73 ctgcggatggcgtgcgaggagccaagca 100
|||||| |||||||||||| ||||||||
Sbjct: 68 ctgcggctggcgtgcgaggtgccaagca 95
>48830_osa-miR160e:pmrd
Length = 114
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccactcgcttagctgccaac 38
|||||||||||||||||||| ||||| | |||||||||
Sbjct: 11 tgcctggctccctgtatgccgctcgcatggctgccaac 48
>48791_oba-miR160:pmrd
Length = 90
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccactcgcttag 30
||||||||||||||||||||||| ||||||
Sbjct: 4 tgcctggctccctgtatgccactggcttag 33
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 69 tctactgcggatggcgtgcgaggagccaagca 100
||||| |||| |||||||||||||||||||||
Sbjct: 56 tctacggcgggtggcgtgcgaggagccaagca 87
>54940_zma-miR160c:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccactc 24
||||||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgccactc 30
>54759_ttu-miR160a:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccactc 24
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactc 24
>54406_sbi-miR160c:pmrd
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccactc 24
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactc 24
>48832_osa-miR160m:pmrd
Length = 82
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccactc 24
||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccactc 24
>48828_osa-miR160c:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccactc 24
||||||||||||||||||||||||
Sbjct: 7 tgcctggctccctgtatgccactc 30
>48827_osa-miR160b:pmrd
Length = 139
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccactc 24
||||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccactc 53
>54780_vvi-miR160c:pmrd
Length = 106
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 74 tgcggatggcgtgcgaggagccaagca 100
||||| |||||||||||||||||||||
Sbjct: 68 tgcgggtggcgtgcgaggagccaagca 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>51363_ppt-miR160e:pmrd
Length = 138
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccact 23
|||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccact 52
>54947_zma-miR160m:pmrd
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54945_zma-miR160h:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54944_zma-miR160g:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54943_zma-miR160f:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccactcgc 26
|||||||||||||||||||| |||||
Sbjct: 21 tgcctggctccctgtatgccgctcgc 46
>54939_zma-miR160b:pmrd
Length = 121
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgccac 42
>54938_zma-miR160a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 10 tgcctggctccctgtatgccac 31
>54781_vvi-miR160d:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 gcggatggcgtgcgaggagcca 96
||||||||||||||||||||||
Sbjct: 65 gcggatggcgtgcgaggagcca 86
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54575_smo-miR160b:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 13 tgcctggctccctgtatgccac 34
>54405_sbi-miR160b:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>54404_sbi-miR160a:pmrd
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>53874_ptc-miRf12052-akr:pmrd
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 12 tgcctggctccctgtatgccac 33
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tggcgtgcgaggagccaagca 100
|||||||||||||||||||||
Sbjct: 76 tggcgtgcgaggagccaagca 96
>51611_ptc-miR160d:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tggcgtgcgaggagccaagca 100
|||||||||||||||||||||
Sbjct: 75 tggcgtgcgaggagccaagca 95
>51608_ptc-miR160a:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 80 tggcgtgcgaggagccaagca 100
|||||||||||||||||||||
Sbjct: 74 tggcgtgcgaggagccaagca 94
>51364_ppt-miR160f:pmrd
Length = 138
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 30 tgcctggctccctgtatgccac 51
>51359_ppt-miR160a:pmrd
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgccac 32
>51334_pga-miR160:pmrd
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgtatgccac 22
>48826_osa-miR160a:pmrd
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>47338_ath-miRf10238-akr:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccac 26
>46936_ath-miR160c:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccac 26
>46935_ath-miR160b:pmrd
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccac 22
||||||||||||||||||||||
Sbjct: 5 tgcctggctccctgtatgccac 26
>46865_aqc-miR160b:pmrd
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgccactcgcttag 30
||||||||||||||||||||| | ||||||
Sbjct: 1 tgcctggctccctgtatgccatttgcttag 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 ggatggcgtgcgaggagcca 96
||||||||||||||||||||
Sbjct: 57 ggatggcgtgcgaggagcca 76
>54783_vvi-miR160f:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54574_smo-miR160a:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>54541_sly-miR160a:pmrd
Length = 129
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 20 tgcctggctccctgtatgcca 40
>51610_ptc-miR160c:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51609_ptc-miR160b:pmrd
Length = 98
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 11 tgcctggctccctgtatgcca 31
>51367_ppt-miR160i:pmrd
Length = 139
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 2 gcctggctccctgtatgccac 22
|||||||||||||||||||||
Sbjct: 31 gcctggctccctgtatgccac 51
>48704_mtr-miR160e:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48703_mtr-miR160d:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48702_mtr-miR160b:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 6 tgcctggctccctgtatgcca 26
>48658_hvv-miR160a:pmrd
Length = 344
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 324 tgcctggctccctgtatgcca 344
>48542_gma-miR160a:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 21 tgcctggctccctgtatgcca 41
>48397_bra-miR160a:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 26 tgcctggctccctgtatgcca 46
>48396_bra-miR160a:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 26 tgcctggctccctgtatgcca 46
>47213_ath-miRf10113-akr:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
>46934_ath-miR160a:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgtatgcca 21
|||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgcca 24
