miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54409_sbi-miR160f:pmrd
Length = 110
Score = 218 bits (110), Expect = 6e-58
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgaatgccatccgagagaagcaatgccatcgtgtccatggcgtgcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcctggctccctgaatgccatccgagagaagcaatgccatcgtgtccatggcgtgcctc 60
Query: 61 ccggttggcgttgagggagtcatgcaggttgcttgcattgcctcagcagc 110
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccggttggcgttgagggagtcatgcaggttgcttgcattgcctcagcagc 110
>48831_osa-miR160f:pmrd
Length = 100
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgaatgccatccgaga 28
||||||||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgaatgccatccgaga 38
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 ggttggcgttgagggagtcatgcagg 88
||||||| ||||||||||||||||||
Sbjct: 67 ggttggcattgagggagtcatgcagg 92
>50560_osa-miRf11345-akr:pmrd
Length = 78
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 2 gcctggctccctgaatgccatccgaga 28
|||||||||||||||||||||||||||
Sbjct: 1 gcctggctccctgaatgccatccgaga 27
>54782_vvi-miR160e:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgaatgccatc 23
|||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgaatgccatc 33
>54779_vvi-miR160b:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgaatgccatc 23
|||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgaatgccatc 33
>54778_vvi-miR160a:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgaatgccatc 23
|||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgaatgccatc 33
>51613_ptc-miR160f:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgaatgccatc 23
|||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgaatgccatc 33
>51612_ptc-miR160e:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgaatgccatc 23
|||||||||||||||||||||||
Sbjct: 11 tgcctggctccctgaatgccatc 33
>48397_bra-miR160a:pmrd
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgaatgccatcc 24
|||||||||||||| |||||||||
Sbjct: 26 tgcctggctccctgtatgccatcc 49
>48396_bra-miR160a:pmrd
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgaatgccatcc 24
|||||||||||||| |||||||||
Sbjct: 26 tgcctggctccctgtatgccatcc 49
