miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;ABXC01005049.1/42369-42278 4558:Sorghum bicolor
(sorghum)
Length = 92
Score = 176 bits (89), Expect = 4e-44
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgaatgccatccgagagaagcaatgccatcgtgtccatggcgtgcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgaatgccatccgagagaagcaatgccatcgtgtccatggcgtgcctc 63
Query: 61 ccggttggcgttgagggagtcatgcaggt 89
|||||||||||||||||||||||||||||
Sbjct: 64 ccggttggcgttgagggagtcatgcaggt 92
>RF00247;mir-160;AY551219.1/24-109 4530:Oryza sativa (rice)
Length = 86
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgaatgccatccgaga 28
||||||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgaatgccatccgaga 31
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 ggttggcgttgagggagtcatgcagg 88
||||||| ||||||||||||||||||
Sbjct: 60 ggttggcattgagggagtcatgcagg 85
>RF00247;mir-160;AC161399.2/100084-100170 3880:Medicago truncatula
(barrel medic)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tgcctggctccctgaatgccatccgaga 28
||||||||||||||||||||||| ||||
Sbjct: 4 tgcctggctccctgaatgccatctgaga 31
