miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;ABXC01000623.1/193437-193304 4558:Sorghum bicolor
(sorghum)
Length = 134
Score = 266 bits (134), Expect = 8e-71
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 11 ttgtgcagggtggagaagcaggacacgtgagcgaccatccagtttccatcgctggctctc 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgtgcagggtggagaagcaggacacgtgagcgaccatccagtttccatcgctggctctc 60
Query: 71 cgctgcgggcgctgccgtgcgttggatcgtcgttgggtggtcgctcatgtgtccgtcctc 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgctgcgggcgctgccgtgcgttggatcgtcgttgggtggtcgctcatgtgtccgtcctc 120
Query: 131 tccaccgagcaccg 144
||||||||||||||
Sbjct: 121 tccaccgagcaccg 134
>RF00647;MIR164;ABRL01001123.1/4697-4828 65489:Oryza barthii
Length = 132
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 11 ttgtgcagggtggagaagcaggacacgtgagcgaccatccagt 53
|||||||||||||||||||||| |||||||| | |||||||||
Sbjct: 1 ttgtgcagggtggagaagcagggcacgtgagtggccatccagt 43
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 103 ttgggtggtcgctcatgtgtccgtcctctccaccgagcac 142
|||| |||||| ||||||||||||| ||||||||||||||
Sbjct: 91 ttggatggtcgttcatgtgtccgtcttctccaccgagcac 130
>RF00647;MIR164;AC226813.1/114113-114237 63629:Oryza minuta
Length = 125
Score = 54.0 bits (27), Expect = 6e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 11 ttgtgcagggtggagaagcaggacacgtgagcgaccatc 49
|||||||||||||||||||||| ||||||| || |||||
Sbjct: 1 ttgtgcagggtggagaagcagggcacgtgaacggccatc 39
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 115 tcatgtgtccgtcctctccaccgagcac 142
||||||||||||| ||||||||||||||
Sbjct: 96 tcatgtgtccgtcttctccaccgagcac 123
