miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;ABXC01000715.1/152379-152276 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 186 bits (94), Expect = 3e-47
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggtcggagacctaacaccgcgaatcatccatggagcagcatgcatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ggggaatgttgtctggtcggagacctaacaccgcgaatcatccatggagcagcatgcatg 65
Query: 61 gtggtggatggtttcggaccaggcttcattcccc 94
||||||||||||||||||||||||||||||||||
Sbjct: 66 gtggtggatggtttcggaccaggcttcattcccc 99
>RF00075;mir-166;AAAA02007901.1/15784-15895 39946:Oryza sativa
Indica Group
Length = 112
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggtcggagacctaacaccg 33
|||||||||||||||||| ||||||||||||||
Sbjct: 6 ggggaatgttgtctggtccgagacctaacaccg 38
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 70 ggtttcggaccaggcttcattcccc 94
|||||||||||||||||||||||||
Sbjct: 83 ggtttcggaccaggcttcattcccc 107
>RF00075;mir-166;ABIM01012128.1/12128-12036 3649:Carica papaya
(papaya)
Length = 93
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 65 tggatggtttcggaccaggcttcattcccc 94
|||||| |||||||||||||||||||||||
Sbjct: 59 tggatgatttcggaccaggcttcattcccc 88
>RF00075;mir-166;AK252042.1/8-95 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 gtttcggaccaggcttcattcccc 94
||||||||||||||||||||||||
Sbjct: 60 gtttcggaccaggcttcattcccc 83
>RF00075;mir-166;ABEU01003209.1/178750-178656
145481:Physcomitrella patens subsp. patens
Length = 95
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 71 gtttcggaccaggcttcattcccc 94
||||||||||||||||||||||||
Sbjct: 67 gtttcggaccaggcttcattcccc 90
>RF00075;mir-166;AARH01001058.1/130278-130374 3694:Populus
trichocarpa
Length = 97
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 tttcggaccaggcttcattcccc 94
|||||||||||||||||||||||
Sbjct: 70 tttcggaccaggcttcattcccc 92
>RF00075;mir-166;AASG02007713.1/11405-11313 3988:Ricinus communis
(castor bean)
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 tttcggaccaggcttcattcccc 94
|||||||||||||||||||||||
Sbjct: 66 tttcggaccaggcttcattcccc 88
>RF00075;mir-166;BABK01039514.1/607-703 34305:Lotus japonicus
Length = 97
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 tttcggaccaggcttcattcccc 94
|||||||||||||||||||||||
Sbjct: 70 tttcggaccaggcttcattcccc 92
>RF00075;mir-166;CAAP02000553.1/130979-130890 29760:Vitis vinifera
Length = 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 tttcggaccaggcttcattcccc 94
|||||||||||||||||||||||
Sbjct: 63 tttcggaccaggcttcattcccc 85
>RF00075;mir-166;AC027660.2/136704-136618 39947:Oryza sativa
Japonica Group
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 gtggatggtttcggaccaggcttcattcccc 94
||||| ||| |||||||||||||||||||||
Sbjct: 52 gtggacggtctcggaccaggcttcattcccc 82
>RF00075;mir-166;AAAA02029560.1/62131-62045 39946:Oryza sativa
Indica Group
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 gtggatggtttcggaccaggcttcattcccc 94
||||| ||| |||||||||||||||||||||
Sbjct: 52 gtggacggtctcggaccaggcttcattcccc 82
>RF00075;mir-166;ABEU01015165.1/9230-9152 145481:Physcomitrella
patens subsp. patens
Length = 79
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 tttcggaccaggcttcattcccc 94
|||||||||||||||||||||||
Sbjct: 52 tttcggaccaggcttcattcccc 74
>RF00075;mir-166;ABIM01027778.1/12902-13001 3649:Carica papaya
(papaya)
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ttcggaccaggcttcattcccc 94
||||||||||||||||||||||
Sbjct: 74 ttcggaccaggcttcattcccc 95
>RF00075;mir-166;EU548832.1/235-380 3702:Arabidopsis thaliana (thale
cress)
Length = 146
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ttcggaccaggcttcattcccc 94
||||||||||||||||||||||
Sbjct: 120 ttcggaccaggcttcattcccc 141
>RF00075;mir-166;AC216447.1/33512-33607 3694:Populus trichocarpa
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ttcggaccaggcttcattcccc 94
||||||||||||||||||||||
Sbjct: 70 ttcggaccaggcttcattcccc 91
>RF00075;mir-166;AC140029.19/70272-70377 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ttcggaccaggcttcattcccc 94
||||||||||||||||||||||
Sbjct: 80 ttcggaccaggcttcattcccc 101
>RF00075;mir-166;CU302248.6/62232-62044 3880:Medicago truncatula
(barrel medic)
Length = 189
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ttcggaccaggcttcattcccc 94
||||||||||||||||||||||
Sbjct: 163 ttcggaccaggcttcattcccc 184
>RF00075;mir-166;BABK01014008.1/1570-1448 34305:Lotus japonicus
Length = 123
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ttcggaccaggcttcattcccc 94
||||||||||||||||||||||
Sbjct: 97 ttcggaccaggcttcattcccc 118
>RF00075;mir-166;CAAP02001545.1/66166-66077 29760:Vitis vinifera
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ttcggaccaggcttcattcccc 94
||||||||||||||||||||||
Sbjct: 64 ttcggaccaggcttcattcccc 85
>RF00075;mir-166;ABXC01000087.1/360026-360107 4558:Sorghum bicolor
(sorghum)
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ttcggaccaggcttcattcccc 94
||||||||||||||||||||||
Sbjct: 56 ttcggaccaggcttcattcccc 77
>RF00075;mir-166;AC096855.5/123486-123562 39947:Oryza sativa
Japonica Group
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ttcggaccaggcttcattcccc 94
||||||||||||||||||||||
Sbjct: 51 ttcggaccaggcttcattcccc 72
>RF00075;mir-166;ABEU01002487.1/1609-1703 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ttcggaccaggcttcattcccc 94
||||||||||||||||||||||
Sbjct: 69 ttcggaccaggcttcattcccc 90
>RF00075;mir-166;ABEU01002053.1/8010-8104 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ttcggaccaggcttcattcccc 94
||||||||||||||||||||||
Sbjct: 69 ttcggaccaggcttcattcccc 90
>RF00075;mir-166;ABEU01001509.1/36651-36730 145481:Physcomitrella
patens subsp. patens
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ttcggaccaggcttcattcccc 94
||||||||||||||||||||||
Sbjct: 54 ttcggaccaggcttcattcccc 75
>RF00075;mir-166;ABEU01008046.1/36531-36607 145481:Physcomitrella
patens subsp. patens
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ttcggaccaggcttcattcccc 94
||||||||||||||||||||||
Sbjct: 51 ttcggaccaggcttcattcccc 72
>RF00075;mir-166;ABEU01002839.1/114707-114612
145481:Physcomitrella patens subsp. patens
Length = 96
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ttcggaccaggcttcattcccc 94
||||||||||||||||||||||
Sbjct: 70 ttcggaccaggcttcattcccc 91
>RF00075;mir-166;ABEU01001509.1/36829-36913 145481:Physcomitrella
patens subsp. patens
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 73 ttcggaccaggcttcattcccc 94
||||||||||||||||||||||
Sbjct: 59 ttcggaccaggcttcattcccc 80
