miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;ABXC01002961.1/62497-62388 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 218 bits (110), Expect = 2e-56
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 16 tttgtggggaatgttggctggctcgaggcatccgcgtcctggcttgcagatcgttttgcc 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttgtggggaatgttggctggctcgaggcatccgcgtcctggcttgcagatcgttttgcc 60
Query: 76 tgctaccggaaagatcgagaggcgtcggaccaggcttcattcctcgcaaa 125
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgctaccggaaagatcgagaggcgtcggaccaggcttcattcctcgcaaa 110
>RF00075;mir-166;BT056134.1/149-273 4577:Zea mays
Length = 125
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 16 tttgtggggaatgttggctggctcgaggca 45
||||||||||||||||||||||||||||||
Sbjct: 1 tttgtggggaatgttggctggctcgaggca 30
>RF00075;mir-166;CAAP02001545.1/66166-66077 29760:Vitis vinifera
Length = 90
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 17 ttgtggggaatgttggctggctcgaggc 44
||||||||||||||||||||||||||||
Sbjct: 2 ttgtggggaatgttggctggctcgaggc 29
>RF00075;mir-166;AP004125.3/115293-115185 39947:Oryza sativa
Japonica Group
Length = 109
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 17 ttgtggggaatgttggctggctcgaggcatcc 48
||||||||||||||||||||||||||| ||||
Sbjct: 2 ttgtggggaatgttggctggctcgaggtatcc 33
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 97 gcgtcggaccaggcttcattcctcgcaa 124
||||||||||||||||||||||||||||
Sbjct: 81 gcgtcggaccaggcttcattcctcgcaa 108
>RF00075;mir-166;AM485267.2/15969-16057 29760:Vitis vinifera
Length = 89
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 16 tttgtggggaatgttggctggctcgaggcat 46
|||| ||||||||||||||||||||||||||
Sbjct: 1 tttgaggggaatgttggctggctcgaggcat 31
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 99 gtcggaccaggcttcattcctcgcaaa 125
|||||||||||||||||||||| ||||
Sbjct: 63 gtcggaccaggcttcattcctctcaaa 89
>RF00075;mir-166;AC140029.19/70272-70377 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 16 tttgtggggaatgttggctggctcgaggc 44
|||| ||||||||||||||||||||||||
Sbjct: 1 tttgaggggaatgttggctggctcgaggc 29
>RF00075;mir-166;ABIM01027778.1/12902-13001 3649:Carica papaya
(papaya)
Length = 100
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 ggggaatgttggctggctcgaggc 44
||||||||||||||||||||||||
Sbjct: 6 ggggaatgttggctggctcgaggc 29
>RF00075;mir-166;BABK01014008.1/1570-1448 34305:Lotus japonicus
Length = 123
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 ggggaatgttggctggctcgaggc 44
||||||||||||||||||||||||
Sbjct: 6 ggggaatgttggctggctcgaggc 29
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 16 tttgtggggaatgttggctggctcgaggcatccgcg 51
|||| ||||||||||| |||| ||||||||||||||
Sbjct: 1 tttgaggggaatgttgtctgggtcgaggcatccgcg 36
