miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54422_sbi-miR166g:pmrd
Length = 134
Score = 266 bits (134), Expect = 4e-72
Identities = 134/134 (100%)
Strand = Plus / Plus
Query: 1 tcatgctcggattaggttagggggattgttgtctggctcggggtctccggtcgagaatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcatgctcggattaggttagggggattgttgtctggctcggggtctccggtcgagaatcc 60
Query: 61 ttggccttgccggagttgtcgttgaccggagatttcggaccaggcttcaatccctttaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttggccttgccggagttgtcgttgaccggagatttcggaccaggcttcaatccctttaac 120
Query: 121 catgcggcatttag 134
||||||||||||||
Sbjct: 121 catgcggcatttag 134
>54967_zma-miR166k:pmrd
Length = 168
Score = 97.6 bits (49), Expect = 2e-21
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 75 gttgtcgttgaccggagatttcggaccaggcttcaatccctttaaccatgcggcatt 131
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 109 gttgtcgtcgaccggagatttcggaccaggcttcaatccctttgaccatgcggcatt 165
Score = 93.7 bits (47), Expect = 3e-20
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 2 catgctcggattaggttagggggattgttgtctggctcggggtctccggtcgaga 56
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2 catgctcgggttaggtcagggggattgttgtctggctcggggtctccggtcgaga 56
>48854_osa-miR166k:pmrd
Length = 127
Score = 61.9 bits (31), Expect = 1e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 95 tcggaccaggcttcaatccctttaaccatgc 125
|||||||||||||||||||||||||||||||
Sbjct: 97 tcggaccaggcttcaatccctttaaccatgc 127
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 attaggttagggggattgttgtctggctcg 40
||||||||| |||| |||||||||||||||
Sbjct: 1 attaggttaaggggtttgttgtctggctcg 30
>48855_osa-miR166l:pmrd
Length = 117
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 95 tcggaccaggcttcaatccctttaacca 122
||||||||||||||||||||||||||||
Sbjct: 87 tcggaccaggcttcaatccctttaacca 114
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 ttaggttagggggattgttgtctgg 36
|||||||| ||||||||||||||||
Sbjct: 2 ttaggttaaggggattgttgtctgg 26
>54966_zma-miR166j:pmrd
Length = 154
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 95 tcggaccaggcttcaatccctttaac 120
||||||||||||||||||||||||||
Sbjct: 115 tcggaccaggcttcaatccctttaac 140
>54420_sbi-miR166e:pmrd
Length = 151
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 95 tcggaccaggcttcaatccctttaac 120
||||||||||||||||||||||||||
Sbjct: 112 tcggaccaggcttcaatccctttaac 137
>48856_osa-miR166m:pmrd
Length = 200
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 95 tcggaccaggcttcaatccctttaacca 122
||||||||||||||| ||||||||||||
Sbjct: 147 tcggaccaggcttcattccctttaacca 174
>54795_vvi-miR166g:pmrd
Length = 100
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 91 gatttcggaccaggcttcaatccc 114
||||||||||||||||||| ||||
Sbjct: 65 gatttcggaccaggcttcattccc 88
>54792_vvi-miR166d:pmrd
Length = 160
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 21 ggggattgttgtctggctcg 40
||||||||||||||||||||
Sbjct: 10 ggggattgttgtctggctcg 29
>54543_sly-miR166a:pmrd
Length = 111
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 91 gatttcggaccaggcttcaatccc 114
||||||||||||||||||| ||||
Sbjct: 82 gatttcggaccaggcttcattccc 105
>51856_ptc-miRf10034-akr:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 91 gatttcggaccaggcttcaatccc 114
||||||||||||||||||| ||||
Sbjct: 68 gatttcggaccaggcttcattccc 91
>51629_ptc-miR166e:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 91 gatttcggaccaggcttcaatccc 114
||||||||||||||||||| ||||
Sbjct: 73 gatttcggaccaggcttcattccc 96
>51626_ptc-miR166b:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 91 gatttcggaccaggcttcaatccc 114
||||||||||||||||||| ||||
Sbjct: 73 gatttcggaccaggcttcattccc 96
>46867_aqc-miR166b:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 91 gatttcggaccaggcttcaatccc 114
||||||||||||||||||| ||||
Sbjct: 64 gatttcggaccaggcttcattccc 87
