miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;ABXC01000050.1/9782-9902 4558:Sorghum bicolor
(sorghum)
Length = 121
Score = 190 bits (96), Expect = 2e-48
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagctctgagtgatcacccgagaagaacaatagttcgaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctagctctgagtgatcacccgagaagaacaatagttcgaggt 73
Query: 61 ggtctcgccttgctaggtcatgctgcggcagcctca 96
||||||||||||||||||||||||||||||||||||
Sbjct: 74 ggtctcgccttgctaggtcatgctgcggcagcctca 109
>RF00640;MIR167_1;EU947925.1/384-504 4577:Zea mays
Length = 121
Score = 127 bits (64), Expect = 3e-29
Identities = 88/96 (91%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagctctgagtgatcacccgagaagaacaatagttcgaggt 60
||||||||||||||||||||||||| |||||||||| |||| |||||||||| |||||||
Sbjct: 14 tgaagctgccagcatgatctagctcggagtgatcacgcgaggagaacaatagctcgaggt 73
Query: 61 ggtctcgccttgctaggtcatgctgcggcagcctca 96
|||| |||||||||| |||||||| ||||||||||
Sbjct: 74 ggtcatgccttgctagatcatgctgtggcagcctca 109
>RF00640;MIR167_1;AC092076.7/52843-52692 39947:Oryza sativa
Japonica Group
Length = 152
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagctctgagtgatca 35
|||||||||||||||||||||||||||| ||||||
Sbjct: 14 tgaagctgccagcatgatctagctctgaatgatca 48
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 67 gccttgctaggtcatgctgcggcagcctca 96
||||||||||||||||||||||||||||||
Sbjct: 111 gccttgctaggtcatgctgcggcagcctca 140
>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
Length = 140
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagctctga 28
||||||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctagctctga 41
>RF00640;MIR167_1;ABIM01012099.1/4885-4992 3649:Carica papaya
(papaya)
Length = 108
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagct 24
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagct 24
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AP006429.1/12775-12654 34305:Lotus japonicus
Length = 122
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagct 24
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;CAAP02000379.1/19428-19545 29760:Vitis vinifera
Length = 118
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagct 24
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;ABXC01005647.1/66563-66713 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctagct 24
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctagct 37
>RF00640;MIR167_1;AC189327.2/282-159 51351:Brassica rapa subsp.
pekinensis
Length = 124
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctag 22
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctag 35
>RF00640;MIR167_1;AC174291.12/5719-6052 3880:Medicago truncatula
(barrel medic)
Length = 334
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgaagctgccagcatgatctag 22
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctag 35
