miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;ABXC01002411.1/32850-32747 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 206 bits (104), Expect = 4e-53
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 3 cgccgcgccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacggg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgccgcgccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacggg 60
Query: 63 acagatcccgccttgcaccaagtgaatccgagccggagcagccg 106
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 acagatcccgccttgcaccaagtgaatccgagccggagcagccg 104
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 119 bits (60), Expect = 8e-27
Identities = 87/95 (91%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 4 gccgcgccgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacggga 63
||||||||||||||||||||||||||||||||||||||| |||||| | | |||||||
Sbjct: 2 gccgcgccgcctcgggctcgcttggtgcagatcgggacccgccgcccgg--ccgacggga 59
Query: 64 cagatcccgccttgcaccaagtgaatccgagccgg 98
| ||||||||||||||||||||||||| |||||||
Sbjct: 60 cggatcccgccttgcaccaagtgaatcggagccgg 94
>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa
Japonica Group
Length = 104
Score = 87.7 bits (44), Expect = 3e-17
Identities = 82/92 (89%), Gaps = 2/92 (2%)
Strand = Plus / Plus
Query: 8 cgccgcctcgggctcgcttggtgcagatcgggacctgccgccg-tgctcggacgggacag 66
||||||||||||||||||||||||||||||||||| ||||||| ||| | ||| | |
Sbjct: 6 cgccgcctcgggctcgcttggtgcagatcgggacccgccgccgccgct-gccggggccgg 64
Query: 67 atcccgccttgcaccaagtgaatccgagccgg 98
|||||||||||||||||||||||| |||||||
Sbjct: 65 atcccgccttgcaccaagtgaatcggagccgg 96
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 64 cagatcccgccttgcaccaagtgaatccgagcc 96
|||||||||||||||| ||| ||||||||||||
Sbjct: 67 cagatcccgccttgcatcaactgaatccgagcc 99
