miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;ABXC01001826.1/87733-87847 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 180 bits (91), Expect = 2e-45
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgatcgatcgatgcaaactcctctgatgtctgatctcatcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgatcgatcgatgcaaactcctctgatgtctgatctcatcag 71
Query: 61 attatcgttgtcggcaagttgttcttggcta 91
|||||||||||||||||||||||||||||||
Sbjct: 72 attatcgttgtcggcaagttgttcttggcta 102
>RF00645;MIR169_2;AP008207.1/8728130-8728248 39947:Oryza sativa
Japonica Group
Length = 119
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgatcgatcgat 30
||||||||||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgatcgatcgat 41
>RF00645;MIR169_2;ABXC01002876.1/68453-68594 4558:Sorghum bicolor
(sorghum)
Length = 142
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccgatcgatcgatgc 32
||||||||||||||||||| ||||||||||
Sbjct: 13 agccaaggatgacttgccggccgatcgatgc 43
>RF00645;MIR169_2;AC189369.2/97764-97940 51351:Brassica rapa
subsp. pekinensis
Length = 177
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgat 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgat 33
>RF00645;MIR169_2;AP000603.1/13143-12929 3702:Arabidopsis thaliana
(thale cress)
Length = 215
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgat 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgat 33
