miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;ABXC01006862.1/83418-83293 4558:Sorghum bicolor
(sorghum)
Length = 126
Score = 202 bits (102), Expect = 6e-52
Identities = 102/102 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggatatgtgcatgcatatgttacaaggcagcatatgcaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggatatgtgcatgcatatgttacaaggcagcatatgcaccc 71
Query: 61 tgttacaagcctgcctgttctccggcaagttgtccttggcta 102
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 tgttacaagcctgcctgttctccggcaagttgtccttggcta 113
>RF00645;MIR169_2;ABIM01024501.1/10420-10301 3649:Carica papaya
(papaya)
Length = 120
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgga 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgga 33
>RF00645;MIR169_2;AL392145.1/61605-61729 3702:Arabidopsis thaliana
(thale cress)
Length = 125
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgga 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgga 33
>RF00645;MIR169_2;AARH01007178.1/187626-187874 3694:Populus
trichocarpa
Length = 249
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgga 22
||||||||||||||||||||||
Sbjct: 16 cagccaaggatgacttgccgga 37
>RF00645;MIR169_2;AASG02001387.1/35857-35778 3988:Ricinus communis
(castor bean)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggatatgtgca 30
|||||||||||||||||||| ||||||||
Sbjct: 12 cagccaaggatgacttgccgactatgtgca 41
>RF00645;MIR169_2;BABK01024578.1/123-239 34305:Lotus japonicus
Length = 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgga 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgga 33
>RF00645;MIR169_2;CAAP02002239.1/50886-50767 29760:Vitis vinifera
Length = 120
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgga 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgga 33
>RF00645;MIR169_2;CAAP02002239.1/44264-44145 29760:Vitis vinifera
Length = 120
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgga 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgga 33
>RF00645;MIR169_2;CAAP02000151.1/80017-79930 29760:Vitis vinifera
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccgga 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgga 33
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 tccggcaagttgtccttggcta 102
||||||||||||||||||||||
Sbjct: 54 tccggcaagttgtccttggcta 75
>RF00645;MIR169_2;AP005769.3/167010-166879 39947:Oryza sativa
Japonica Group
Length = 132
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 tccggcaagttgtccttggcta 102
||||||||||||||||||||||
Sbjct: 98 tccggcaagttgtccttggcta 119
