miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;ABXC01001391.1/122512-122383 4558:Sorghum bicolor
(sorghum)
Length = 130
Score = 216 bits (109), Expect = 4e-56
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgccggcatttcttgggtcggatgactgagttgttgagcctgggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tagccaaggatgacttgccggcatttcttgggtcggatgactgagttgttgagcctgggg 70
Query: 61 atgaacagacccggatcgacggccggccggcaagtcatctgtggctacg 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 atgaacagacccggatcgacggccggccggcaagtcatctgtggctacg 119
>RF00865;MIR169_5;ABXC01001391.1/122449-122522 4558:Sorghum
bicolor (sorghum)
Length = 74
Score = 107 bits (54), Expect = 3e-23
Identities = 54/54 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgccggcatttcttgggtcggatgactgagttgttgagc 54
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 tagccaaggatgacttgccggcatttcttgggtcggatgactgagttgttgagc 1
>RF00645;MIR169_2;AARH01007603.1/209255-209144 3694:Populus
trichocarpa
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggcatttc 27
||||||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcatttc 38
>RF00645;MIR169_2;AARH01002993.1/21348-21232 3694:Populus
trichocarpa
Length = 117
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggcatttc 27
||||||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcatttc 38
>RF00645;MIR169_2;AM458937.2/4897-4993 29760:Vitis vinifera
Length = 97
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggcattt 26
|||||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcattt 37
>RF00645;MIR169_2;BABK01005902.1/1720-1822 34305:Lotus japonicus
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggcatt 25
||||||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgccggcatt 38
>RF00645;MIR169_2;BABK01004287.1/2937-3041 34305:Lotus japonicus
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggcatt 25
||||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcatt 36
>RF00645;MIR169_2;BABK01035994.1/667-569 34305:Lotus japonicus
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggcatt 25
||||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcatt 36
>RF00645;MIR169_2;AASG02000349.1/3893-3789 3988:Ricinus communis
(castor bean)
Length = 105
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggcat 24
|||||||||||||||||||||||
Sbjct: 14 agccaaggatgacttgccggcat 36
>RF00645;MIR169_2;BABK01002592.1/3832-3946 34305:Lotus japonicus
Length = 115
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggcat 24
|||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcat 35
>RF00645;MIR169_2;BABK01041096.1/153-266 34305:Lotus japonicus
Length = 114
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggcat 24
|||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggcat 35
>RF00645;MIR169_2;ABIM01024501.1/10588-10497 3649:Carica papaya
(papaya)
Length = 92
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 12 tagccaaggatgacttgccggc 33
>RF00645;MIR169_2;ABIM01004543.1/8825-9065 3649:Carica papaya
(papaya)
Length = 241
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggca 23
||||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgccggca 36
>RF00645;MIR169_2;AARH01011492.1/38551-38428 3694:Populus
trichocarpa
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggca 23
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;AARH01010231.1/110431-110554 3694:Populus
trichocarpa
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggca 23
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;AARH01003557.1/353551-353722 3694:Populus
trichocarpa
Length = 172
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggca 23
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;AASG02000866.1/18426-18322 3988:Ricinus communis
(castor bean)
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggca 23
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;AC232769.1/98561-98655 4081:Solanum lycopersicum
Length = 95
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggca 23
||||||||||||||||||||||
Sbjct: 16 agccaaggatgacttgccggca 37
>RF00645;MIR169_2;AM489765.1/426-571 4102:Petunia x hybrida
Length = 146
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggca 23
||||||||||||||||||||||
Sbjct: 16 agccaaggatgacttgccggca 37
>RF00645;MIR169_2;CAAP02000146.1/86923-86822 29760:Vitis vinifera
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggca 23
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;AM476671.2/16778-16661 29760:Vitis vinifera
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgccggcattt 26
|||||||||||||||||| |||||||
Sbjct: 12 tagccaaggatgacttgctggcattt 37
>RF00645;MIR169_2;CAAP02000146.1/54492-54392 29760:Vitis vinifera
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggca 23
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;AM488283.1/32022-31880 29760:Vitis vinifera
Length = 143
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggca 23
||||||||||||||||||||||
Sbjct: 15 agccaaggatgacttgccggca 36
>RF00645;MIR169_2;AM444055.2/7771-7675 29760:Vitis vinifera
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggca 23
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggca 34
>RF00645;MIR169_2;ABXC01002876.1/68453-68594 4558:Sorghum bicolor
(sorghum)
Length = 142
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 12 tagccaaggatgacttgccggc 33
>RF00645;MIR169_2;AAAA02007387.1/24033-23898 39946:Oryza sativa
Indica Group
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 12 tagccaaggatgacttgccggc 33
>RF00645;MIR169_2;AP008208.1/31224491-31224356 39947:Oryza sativa
Japonica Group
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 12 tagccaaggatgacttgccggc 33
