miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;ABXC01001464.1/182182-182031 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 299 bits (151), Expect = 6e-81
Identities = 151/151 (100%)
Strand = Plus / Minus
Query: 2 cgataagagtctgcccagatagccaaggatgacttgcctgtggcctcttggcttggcttg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 cgataagagtctgcccagatagccaaggatgacttgcctgtggcctcttggcttggcttg 93
Query: 62 agagcttattaactctgtgcacgtttaatttgctcttcttgtggcctcgatcacaggcag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 agagcttattaactctgtgcacgtttaatttgctcttcttgtggcctcgatcacaggcag 33
Query: 122 tctccttggctagtccgggcggctcttatct 152
|||||||||||||||||||||||||||||||
Sbjct: 32 tctccttggctagtccgggcggctcttatct 2
>RF00645;MIR169_2;ABXC01001464.1/182038-182176 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 276 bits (139), Expect = 8e-74
Identities = 139/139 (100%)
Strand = Plus / Plus
Query: 9 agtctgcccagatagccaaggatgacttgcctgtggcctcttggcttggcttgagagctt 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtctgcccagatagccaaggatgacttgcctgtggcctcttggcttggcttgagagctt 60
Query: 69 attaactctgtgcacgtttaatttgctcttcttgtggcctcgatcacaggcagtctcctt 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 attaactctgtgcacgtttaatttgctcttcttgtggcctcgatcacaggcagtctcctt 120
Query: 129 ggctagtccgggcggctct 147
|||||||||||||||||||
Sbjct: 121 ggctagtccgggcggctct 139
>RF00865;MIR169_5;BT061088.1/1092-1244 4577:Zea mays
Length = 153
Score = 123 bits (62), Expect = 7e-28
Identities = 123/142 (86%), Gaps = 1/142 (0%)
Strand = Plus / Minus
Query: 2 cgataagagtctgcccagatagccaaggatgacttgcctgtggcctcttggcttggcttg 61
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 153 cgataagagtctgtccagatagccaaggatgacttgcctgtggcttcttggcttggcttg 94
Query: 62 agagcttattaactctgtgcacgtttaatttgctcttcttgtggcctcgatcacaggcag 121
||| ||||||||||| | |||||| || ||||||||||||||||||||
Sbjct: 93 gctcgggcaaaaccttgtgcacgtttta-ttgctcgcctcgtggcctcgatcacaggcag 35
Query: 122 tctccttggctagtccgggcgg 143
||||||||||||||||||||||
Sbjct: 34 tctccttggctagtccgggcgg 13
>RF00865;MIR169_5;AACV01020369.1/3584-3757 39947:Oryza sativa
Japonica Group
Length = 174
Score = 83.8 bits (42), Expect = 6e-16
Identities = 48/50 (96%)
Strand = Plus / Minus
Query: 3 gataagagtctgcccagatagccaaggatgacttgcctgtggcctcttgg 52
|||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 173 gataagagtctgtctagatagccaaggatgacttgcctgtggcctcttgg 124
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 114 acaggcagtctccttggctagtccgggcggctcttatc 151
||||||||||||||||||||||| ||||||||||||||
Sbjct: 40 acaggcagtctccttggctagtctgggcggctcttatc 3
>RF00645;MIR169_2;BT061088.1/1224-1114 4577:Zea mays
Length = 111
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 22 agccaaggatgacttgcctgtggcctcttggcttggcttg 61
|||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 agccaaggatgacttgcctgtggcttcttggcttggcttg 40
>RF00645;MIR169_2;AY551243.1/20-180 4530:Oryza sativa (rice)
Length = 161
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 9 agtctgcccagatagccaaggatgacttgcctgtggcctcttgg 52
|||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 1 agtctgtctagatagccaaggatgacttgcctgtggcctcttgg 44
Score = 60.0 bits (30), Expect = 9e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 114 acaggcagtctccttggctagtccgggcggctct 147
||||||||||||||||||||||| ||||||||||
Sbjct: 128 acaggcagtctccttggctagtctgggcggctct 161
>RF00865;MIR169_5;EU968670.1/235-103 4577:Zea mays
Length = 133
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 108 tcgatcacaggcagtctccttggctagtccgggcggctct 147
|||||| |||||||||||||||||||| ||| ||||||||
Sbjct: 46 tcgatcgcaggcagtctccttggctagcccgagcggctct 7
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 21 tagccaaggatgacttgcctgtggcctc 48
||||||||||||||||||||||||||||
Sbjct: 113 tagccaaggatgacttgcctgtggcctc 86
>RF00865;MIR169_5;ABXC01001464.1/179344-179197 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 21 tagccaaggatgacttgcctgtggcctc 48
||||||||||||||||||||||||||||
Sbjct: 128 tagccaaggatgacttgcctgtggcctc 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 108 tcgatcacaggcagtctccttggctag 134
|||||| ||||||||||||||||||||
Sbjct: 46 tcgatcgcaggcagtctccttggctag 20
>RF00645;MIR169_2;EU968670.1/110-229 4577:Zea mays
Length = 120
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 21 tagccaaggatgacttgcctgtggcctc 48
||||||||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctgtggcctc 41
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 108 tcgatcacaggcagtctccttggctagtccgggcggctct 147
|||||| |||||||||||||||||||| ||| ||||||||
Sbjct: 81 tcgatcgcaggcagtctccttggctagcccgagcggctct 120
>RF00645;MIR169_2;ABXC01001464.1/179202-179340 4558:Sorghum
bicolor (sorghum)
Length = 139
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 21 tagccaaggatgacttgcctgtggcctc 48
||||||||||||||||||||||||||||
Sbjct: 16 tagccaaggatgacttgcctgtggcctc 43
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 108 tcgatcacaggcagtctccttggctag 134
|||||| ||||||||||||||||||||
Sbjct: 98 tcgatcgcaggcagtctccttggctag 124
>RF00865;MIR169_5;AAAA02026107.1/14351-14478 39946:Oryza sativa
Indica Group
Length = 128
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 19 gatagccaaggatgacttgcctgtggcctc 48
||||||||||||||||||||||||| ||||
Sbjct: 110 gatagccaaggatgacttgcctgtgtcctc 81
>RF00645;MIR169_2;AAAA02026107.1/14467-14357 39946:Oryza sativa
Indica Group
Length = 111
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 19 gatagccaaggatgacttgcctgtggcctc 48
||||||||||||||||||||||||| ||||
Sbjct: 8 gatagccaaggatgacttgcctgtgtcctc 37
>RF00645;MIR169_2;ABXC01005012.1/1911-1797 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 50.1 bits (25), Expect = 9e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 19 gatagccaaggatgacttgcctgtg 43
|||||||||||||||||||||||||
Sbjct: 8 gatagccaaggatgacttgcctgtg 32
>RF00865;MIR169_5;ABIM01022203.1/1489-1639 3649:Carica papaya
(papaya)
Length = 151
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 19 gatagccaaggatgacttgcctgtggcc 46
||||||||||||||||||||||| ||||
Sbjct: 134 gatagccaaggatgacttgcctgaggcc 107
>RF00865;MIR169_5;AY551246.1/188-45 4530:Oryza sativa (rice)
Length = 144
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 112 tcacaggcagtctccttggctagtccgggcggctct 147
||||||||||||||||||||||| | | ||||||||
Sbjct: 42 tcacaggcagtctccttggctagcctgagcggctct 7
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 21 tagccaaggatgacttgcctgtg 43
|||||||||||||||||||||||
Sbjct: 124 tagccaaggatgacttgcctgtg 102
>RF00645;MIR169_2;ABIM01022203.1/1632-1495 3649:Carica papaya
(papaya)
Length = 138
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19 gatagccaaggatgacttgcctgtggcc 46
||||||||||||||||||||||| ||||
Sbjct: 11 gatagccaaggatgacttgcctgaggcc 38
>RF00645;MIR169_2;AARH01001852.1/3885-3676 3694:Populus
trichocarpa
Length = 210
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 21 tagccaaggatgacttgcctgtggcctc 48
|||||||||||||||||||||| |||||
Sbjct: 13 tagccaaggatgacttgcctgtagcctc 40
>RF00645;MIR169_2;AC137595.2/89199-89329 39947:Oryza sativa Japonica
Group
Length = 131
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 112 tcacaggcagtctccttggctagtccgggcggctct 147
||||||||||||||||||||||| | | ||||||||
Sbjct: 96 tcacaggcagtctccttggctagcctgagcggctct 131
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tagccaaggatgacttgcctgtg 43
|||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctgtg 36
>RF00865;MIR169_5;AARH01000583.1/30355-30198 3694:Populus
trichocarpa
Length = 158
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 19 gatagccaaggatgacttgcctg 41
|||||||||||||||||||||||
Sbjct: 141 gatagccaaggatgacttgcctg 119
>RF00865;MIR169_5;AARH01009234.1/70247-70410 3694:Populus
trichocarpa
Length = 164
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 19 gatagccaaggatgacttgcctg 41
|||||||||||||||||||||||
Sbjct: 147 gatagccaaggatgacttgcctg 125
>RF00865;MIR169_5;AASG02003941.1/7918-8066 3988:Ricinus communis
(castor bean)
Length = 149
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 19 gatagccaaggatgacttgcctg 41
|||||||||||||||||||||||
Sbjct: 132 gatagccaaggatgacttgcctg 110
>RF00865;MIR169_5;AASG02003632.1/18586-18737 3988:Ricinus communis
(castor bean)
Length = 152
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 19 gatagccaaggatgacttgcctg 41
|||||||||||||||||||||||
Sbjct: 135 gatagccaaggatgacttgcctg 113
>RF00865;MIR169_5;CAAP02000001.1/222751-222589 29760:Vitis vinifera
Length = 163
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 19 gatagccaaggatgacttgcctg 41
|||||||||||||||||||||||
Sbjct: 146 gatagccaaggatgacttgcctg 124
>RF00865;MIR169_5;AP004464.3/58814-58687 39947:Oryza sativa Japonica
Group
Length = 128
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 21 tagccaaggatgacttgcctgtg 43
|||||||||||||||||||||||
Sbjct: 108 tagccaaggatgacttgcctgtg 86
>RF00865;MIR169_5;AK240880.1/275-135 39947:Oryza sativa Japonica
Group
Length = 141
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 21 tagccaaggatgacttgcctgtg 43
|||||||||||||||||||||||
Sbjct: 121 tagccaaggatgacttgcctgtg 99
>RF00645;MIR169_2;AARH01000583.1/30205-30349 3694:Populus
trichocarpa
Length = 145
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 gatagccaaggatgacttgcctg 41
|||||||||||||||||||||||
Sbjct: 11 gatagccaaggatgacttgcctg 33
>RF00645;MIR169_2;AC216452.1/111514-111664 3694:Populus
trichocarpa
Length = 151
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 gatagccaaggatgacttgcctg 41
|||||||||||||||||||||||
Sbjct: 11 gatagccaaggatgacttgcctg 33
>RF00645;MIR169_2;AASG02003632.1/18730-18592 3988:Ricinus communis
(castor bean)
Length = 139
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 gatagccaaggatgacttgcctg 41
|||||||||||||||||||||||
Sbjct: 11 gatagccaaggatgacttgcctg 33
>RF00645;MIR169_2;AASG02003941.1/8059-7924 3988:Ricinus communis
(castor bean)
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 gatagccaaggatgacttgcctg 41
|||||||||||||||||||||||
Sbjct: 11 gatagccaaggatgacttgcctg 33
>RF00645;MIR169_2;AM487000.2/29208-29357 29760:Vitis vinifera
Length = 150
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 19 gatagccaaggatgacttgcctg 41
|||||||||||||||||||||||
Sbjct: 11 gatagccaaggatgacttgcctg 33
>RF00645;MIR169_2;AP004464.3/58694-58808 39947:Oryza sativa
Japonica Group
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tagccaaggatgacttgcctgtg 43
|||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctgtg 36
>RF00645;MIR169_2;CT835986.1/139-261 39946:Oryza sativa Indica
Group
Length = 123
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 tagccaaggatgacttgcctgtg 43
|||||||||||||||||||||||
Sbjct: 9 tagccaaggatgacttgcctgtg 31
>RF00865;MIR169_5;AY551203.1/210-25 3702:Arabidopsis thaliana (thale
cress)
Length = 186
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 20 atagccaaggatgacttgcctg 41
||||||||||||||||||||||
Sbjct: 168 atagccaaggatgacttgcctg 147
>RF00865;MIR169_5;AB016889.1/44658-44824 3702:Arabidopsis thaliana
(thale cress)
Length = 167
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 tagccaaggatgacttgcctgt 42
||||||||||||||||||||||
Sbjct: 148 tagccaaggatgacttgcctgt 127
>RF00865;MIR169_5;AASG02006505.1/277-428 3988:Ricinus communis
(castor bean)
Length = 152
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 19 gatagccaaggatgacttgcct 40
||||||||||||||||||||||
Sbjct: 134 gatagccaaggatgacttgcct 113
>RF00865;MIR169_5;CU468266.5/4267-4422 3880:Medicago truncatula
(barrel medic)
Length = 156
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 19 gatagccaaggatgacttgcct 40
||||||||||||||||||||||
Sbjct: 138 gatagccaaggatgacttgcct 117
>RF00865;MIR169_5;ABXC01005011.1/62536-62662 4558:Sorghum bicolor
(sorghum)
Length = 127
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 19 gatagccaaggatgacttgcct 40
||||||||||||||||||||||
Sbjct: 109 gatagccaaggatgacttgcct 88
>RF00865;MIR169_5;AACV01018924.1/12529-12684 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 114 acaggcagtctccttggctagtccgg 139
||||||||||||||||||||| ||||
Sbjct: 40 acaggcagtctccttggctagcccgg 15
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 21 tagccaaggatgacttgcctgt 42
||||||||||||||||||||||
Sbjct: 137 tagccaaggatgacttgcctgt 116
>RF00645;MIR169_2;AB016889.1/44816-44664 3702:Arabidopsis thaliana
(thale cress)
Length = 153
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tagccaaggatgacttgcctgt 42
||||||||||||||||||||||
Sbjct: 12 tagccaaggatgacttgcctgt 33
>RF00645;MIR169_2;AY551203.1/30-206 3702:Arabidopsis thaliana
(thale cress)
Length = 177
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 atagccaaggatgacttgcctg 41
||||||||||||||||||||||
Sbjct: 14 atagccaaggatgacttgcctg 35
>RF00645;MIR169_2;AASG02006505.1/420-283 3988:Ricinus communis
(castor bean)
Length = 138
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gatagccaaggatgacttgcct 40
||||||||||||||||||||||
Sbjct: 11 gatagccaaggatgacttgcct 32
>RF00645;MIR169_2;CU468266.5/4414-4273 3880:Medicago truncatula
(barrel medic)
Length = 142
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 19 gatagccaaggatgacttgcct 40
||||||||||||||||||||||
Sbjct: 11 gatagccaaggatgacttgcct 32
>RF00645;MIR169_2;AP008214.1/26806653-26806795 39947:Oryza sativa
Japonica Group
Length = 143
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 21 tagccaaggatgacttgcctgt 42
||||||||||||||||||||||
Sbjct: 13 tagccaaggatgacttgcctgt 34
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 114 acaggcagtctccttggctagtccgg 139
||||||||||||||||||||| ||||
Sbjct: 110 acaggcagtctccttggctagcccgg 135
