miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;ABXC01002876.1/68453-68594 4558:Sorghum bicolor
(sorghum)
Length = 142
Score = 244 bits (123), Expect = 2e-64
Identities = 123/123 (100%)
Strand = Plus / Plus
Query: 1 tgtagccaaggatgacttgccggccgatcgatgcctcatccctgtccgggaacgtcatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 tgtagccaaggatgacttgccggccgatcgatgcctcatccctgtccgggaacgtcatgc 69
Query: 61 atgtgatgcaaactgtgaggccgcatcgtcgatcgaccggcaggttcttctctttggcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 atgtgatgcaaactgtgaggccgcatcgtcgatcgaccggcaggttcttctctttggcta 129
Query: 121 cac 123
|||
Sbjct: 130 cac 132
>RF00645;MIR169_2;AAAA02007387.1/24033-23898 39946:Oryza sativa
Indica Group
Length = 136
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgtagccaaggatgacttgccggcc 25
|||||||||||||||||||||||||
Sbjct: 10 tgtagccaaggatgacttgccggcc 34
>RF00645;MIR169_2;AP008208.1/31224491-31224356 39947:Oryza sativa
Japonica Group
Length = 136
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 tgtagccaaggatgacttgccggcc 25
|||||||||||||||||||||||||
Sbjct: 10 tgtagccaaggatgacttgccggcc 34
>RF00645;MIR169_2;ABIM01024501.1/10588-10497 3649:Carica papaya
(papaya)
Length = 92
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgtagccaaggatgacttgccggc 24
||||||||||||||||||||||||
Sbjct: 10 tgtagccaaggatgacttgccggc 33
>RF00865;MIR169_5;ABXC01001391.1/122449-122522 4558:Sorghum
bicolor (sorghum)
Length = 74
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 2 gtagccaaggatgacttgccggc 24
|||||||||||||||||||||||
Sbjct: 55 gtagccaaggatgacttgccggc 33
>RF00645;MIR169_2;ABIM01016748.1/13946-13822 3649:Carica papaya
(papaya)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 agccaaggatgacttgccggccg 26
|||||||||||||||||||||||
Sbjct: 16 agccaaggatgacttgccggccg 38
>RF00645;MIR169_2;ABXC01001391.1/122512-122383 4558:Sorghum
bicolor (sorghum)
Length = 130
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 gtagccaaggatgacttgccggc 24
|||||||||||||||||||||||
Sbjct: 10 gtagccaaggatgacttgccggc 32
>RF00645;MIR169_2;ABXC01001826.1/87733-87847 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 4 agccaaggatgacttgccggccgatcgatgc 34
||||||||||||||||||| ||||||||||
Sbjct: 13 agccaaggatgacttgccgatcgatcgatgc 43
>RF00645;MIR169_2;AP008214.1/7634984-7635113 39947:Oryza sativa
Japonica Group
Length = 130
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 agccaaggatgacttgccggccg 26
|||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggccg 35
