miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;ABXC01004427.1/51987-51869 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 192 bits (97), Expect = 6e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggctcctcaaatttgaagcgtcgtctaagctgctgaggctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggctcctcaaatttgaagcgtcgtctaagctgctgaggctt 71
Query: 61 aataaaaacttagtcggcaagtctgtccttggctaca 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 72 aataaaaacttagtcggcaagtctgtccttggctaca 108
>RF00645;MIR169_2;BT060668.1/99-217 4577:Zea mays
Length = 119
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 67 aacttagtcggcaagtctgtccttggctaca 97
|||||||||||||||||||||||||||||||
Sbjct: 78 aacttagtcggcaagtctgtccttggctaca 108
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggctcct 26
||||||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggctcct 37
>RF00645;MIR169_2;AL662968.3/150189-150074 39947:Oryza sativa
Japonica Group
Length = 116
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggctcct 26
||||||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggctcct 37
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 70 ttagtcggcaagtctgtccttggctaca 97
|||| |||||||||||||||||||||||
Sbjct: 78 ttagccggcaagtctgtccttggctaca 105
>RF00645;MIR169_2;ABIM01024501.1/586-465 3649:Carica papaya
(papaya)
Length = 122
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggctc 24
||||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggctc 35
>RF00645;MIR169_2;AASG02007020.1/8399-8148 3988:Ricinus communis
(castor bean)
Length = 252
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggct 23
|||||||||||||||||||||||
Sbjct: 14 cagccaaggatgacttgccggct 36
>RF00865;MIR169_5;CAAP02000001.1/222970-222840 29760:Vitis vinifera
Length = 131
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 2 agccaaggatgacttgccggctcctc 27
|||||||||||||||||| |||||||
Sbjct: 111 agccaaggatgacttgcctgctcctc 86
>RF00645;MIR169_2;ABIM01016748.1/13946-13822 3649:Carica papaya
(papaya)
Length = 125
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 15 cagccaaggatgacttgccggc 36
>RF00645;MIR169_2;ABIM01024501.1/10588-10497 3649:Carica papaya
(papaya)
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggct 23
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggct 34
>RF00645;MIR169_2;ABIM01004543.1/8825-9065 3649:Carica papaya
(papaya)
Length = 241
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 14 cagccaaggatgacttgccggc 35
>RF00645;MIR169_2;AARH01011492.1/38551-38428 3694:Populus
trichocarpa
Length = 124
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggc 33
>RF00645;MIR169_2;AARH01010231.1/110431-110554 3694:Populus
trichocarpa
Length = 124
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggc 33
>RF00645;MIR169_2;AARH01007603.1/209255-209144 3694:Populus
trichocarpa
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggc 33
>RF00645;MIR169_2;AARH01003557.1/353551-353722 3694:Populus
trichocarpa
Length = 172
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggc 33
>RF00645;MIR169_2;AARH01002993.1/21348-21232 3694:Populus
trichocarpa
Length = 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggc 33
>RF00645;MIR169_2;AASG02000866.1/18426-18322 3988:Ricinus communis
(castor bean)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggc 33
>RF00645;MIR169_2;AASG02000349.1/3893-3789 3988:Ricinus communis
(castor bean)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 13 cagccaaggatgacttgccggc 34
>RF00645;MIR169_2;AC148485.10/86560-86786 3880:Medicago truncatula
(barrel medic)
Length = 227
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 13 cagccaaggatgacttgccggc 34
>RF00645;MIR169_2;BABK01022237.1/713-821 34305:Lotus japonicus
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggct 23
||||||||||||||||||||||
Sbjct: 13 agccaaggatgacttgccggct 34
>RF00645;MIR169_2;BABK01005902.1/1720-1822 34305:Lotus japonicus
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 14 cagccaaggatgacttgccggc 35
>RF00645;MIR169_2;BABK01004287.1/2937-3041 34305:Lotus japonicus
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggc 33
>RF00645;MIR169_2;AC232769.1/98561-98655 4081:Solanum lycopersicum
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 15 cagccaaggatgacttgccggc 36
>RF00645;MIR169_2;AM489765.1/426-571 4102:Petunia x hybrida
Length = 146
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 15 cagccaaggatgacttgccggc 36
>RF00645;MIR169_2;FM956490.1/302-402 4151:Antirrhinum majus
(snapdragon)
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggc 33
>RF00645;MIR169_2;AM488283.1/32022-31880 29760:Vitis vinifera
Length = 143
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 14 cagccaaggatgacttgccggc 35
>RF00645;MIR169_2;CAAP02000001.1/222847-222964 29760:Vitis
vinifera
Length = 118
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgccggctcctc 27
|||||||||||||||||| |||||||
Sbjct: 14 agccaaggatgacttgcctgctcctc 39
>RF00645;MIR169_2;AM444055.2/7771-7675 29760:Vitis vinifera
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggc 33
>RF00645;MIR169_2;AP008214.1/7634984-7635113 39947:Oryza sativa
Japonica Group
Length = 130
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 cagccaaggatgacttgccggc 22
||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccggc 33
