miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;ABXC01005012.1/1911-1797 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 192 bits (97), Expect = 6e-49
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 1 tgatagccaaggatgacttgcctgtgtcctttgtgccgaaggatcagaaatgtgagcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tgatagccaaggatgacttgcctgtgtcctttgtgccgaaggatcagaaatgtgagcctt 66
Query: 61 tgagatagatggttcataggcagtctccttggctagc 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 67 tgagatagatggttcataggcagtctccttggctagc 103
>RF00865;MIR169_5;ABXC01005011.1/62536-62662 4558:Sorghum bicolor
(sorghum)
Length = 127
Score = 103 bits (52), Expect = 4e-22
Identities = 87/97 (89%), Gaps = 5/97 (5%)
Strand = Plus / Minus
Query: 1 tgatagccaaggatgacttgcctgtgtcctttgtgccgaaggatcagaaatgtgagcctt 60
||||||||||||||||||||||| |||||||||| || ||||||||| ||||||| ||||
Sbjct: 110 tgatagccaaggatgacttgcctatgtcctttgtcccaaaggatcag-aatgtgaacctt 52
Query: 61 tgagatagatggttcataggcagtctccttggctagc 97
|| || ||||||||||||||||||||||||||||
Sbjct: 51 tg----agttggttcataggcagtctccttggctagc 19
>RF00645;MIR169_2;ABXC01005011.1/62641-62556 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 91.7 bits (46), Expect = 2e-18
Identities = 81/91 (89%), Gaps = 5/91 (5%)
Strand = Plus / Plus
Query: 5 agccaaggatgacttgcctgtgtcctttgtgccgaaggatcagaaatgtgagcctttgag 64
||||||||||||||||||| |||||||||| || ||||||||| ||||||| ||||||
Sbjct: 1 agccaaggatgacttgcctatgtcctttgtcccaaaggatcag-aatgtgaacctttg-- 57
Query: 65 atagatggttcataggcagtctccttggcta 95
|| ||||||||||||||||||||||||||
Sbjct: 58 --agttggttcataggcagtctccttggcta 86
>RF00865;MIR169_5;AAAA02026107.1/14351-14478 39946:Oryza sativa
Indica Group
Length = 128
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1 tgatagccaaggatgacttgcctgtgtcct 30
||||||||||||||||||||||||||||||
Sbjct: 111 tgatagccaaggatgacttgcctgtgtcct 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 70 tggttcataggcagtctccttggctagc 97
|||||||| |||||||||||||||||||
Sbjct: 46 tggttcatgggcagtctccttggctagc 19
>RF00645;MIR169_2;AAAA02026107.1/14467-14357 39946:Oryza sativa
Indica Group
Length = 111
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tgatagccaaggatgacttgcctgtgtcct 30
||||||||||||||||||||||||||||||
Sbjct: 7 tgatagccaaggatgacttgcctgtgtcct 36
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 70 tggttcataggcagtctccttggctagc 97
|||||||| |||||||||||||||||||
Sbjct: 72 tggttcatgggcagtctccttggctagc 99
>RF00865;MIR169_5;AP004464.3/58814-58687 39947:Oryza sativa Japonica
Group
Length = 128
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 4 tagccaaggatgacttgcctgtgtcctt 31
||||||||||||||||||||||||||||
Sbjct: 108 tagccaaggatgacttgcctgtgtcctt 81
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 70 tggttcataggcagtctccttggctag 96
|||||||||||||||||||||||||||
Sbjct: 46 tggttcataggcagtctccttggctag 20
>RF00865;MIR169_5;AK240880.1/275-135 39947:Oryza sativa Japonica
Group
Length = 141
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 4 tagccaaggatgacttgcctgtgtcctt 31
||||||||||||||||||||||||||||
Sbjct: 121 tagccaaggatgacttgcctgtgtcctt 94
>RF00645;MIR169_2;AP004464.3/58694-58808 39947:Oryza sativa
Japonica Group
Length = 115
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 4 tagccaaggatgacttgcctgtgtcctt 31
||||||||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctgtgtcctt 41
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 70 tggttcataggcagtctccttggctag 96
|||||||||||||||||||||||||||
Sbjct: 76 tggttcataggcagtctccttggctag 102
>RF00645;MIR169_2;CT835986.1/139-261 39946:Oryza sativa Indica
Group
Length = 123
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 4 tagccaaggatgacttgcctgtgtcctt 31
||||||||||||||||||||||||||||
Sbjct: 9 tagccaaggatgacttgcctgtgtcctt 36
>RF00645;MIR169_2;BT062831.1/323-237 4577:Zea mays
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 agccaaggatgacttgcctgtgtcctttgt 34
||||||||||||||||||| ||||||||||
Sbjct: 1 agccaaggatgacttgcctatgtcctttgt 30
>RF00865;MIR169_5;BT061088.1/1092-1244 4577:Zea mays
Length = 153
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 2 gatagccaaggatgacttgcctgtg 26
|||||||||||||||||||||||||
Sbjct: 136 gatagccaaggatgacttgcctgtg 112
>RF00865;MIR169_5;ABXC01001464.1/182182-182031 4558:Sorghum bicolor
(sorghum)
Length = 152
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 2 gatagccaaggatgacttgcctgtg 26
|||||||||||||||||||||||||
Sbjct: 135 gatagccaaggatgacttgcctgtg 111
>RF00865;MIR169_5;AACV01020369.1/3584-3757 39947:Oryza sativa
Japonica Group
Length = 174
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 2 gatagccaaggatgacttgcctgtg 26
|||||||||||||||||||||||||
Sbjct: 157 gatagccaaggatgacttgcctgtg 133
>RF00865;MIR169_5;AY551246.1/188-45 4530:Oryza sativa (rice)
Length = 144
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 4 tagccaaggatgacttgcctgtgtc 28
|||||||||||||||||||||||||
Sbjct: 124 tagccaaggatgacttgcctgtgtc 100
>RF00645;MIR169_2;ABXC01001464.1/182038-182176 4558:Sorghum
bicolor (sorghum)
Length = 139
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 gatagccaaggatgacttgcctgtg 26
|||||||||||||||||||||||||
Sbjct: 11 gatagccaaggatgacttgcctgtg 35
>RF00645;MIR169_2;AC137595.2/89199-89329 39947:Oryza sativa
Japonica Group
Length = 131
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 4 tagccaaggatgacttgcctgtgtc 28
|||||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctgtgtc 38
>RF00645;MIR169_2;AY551243.1/20-180 4530:Oryza sativa (rice)
Length = 161
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 2 gatagccaaggatgacttgcctgtg 26
|||||||||||||||||||||||||
Sbjct: 11 gatagccaaggatgacttgcctgtg 35
>RF00865;MIR169_5;AARH01000583.1/30355-30198 3694:Populus
trichocarpa
Length = 158
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1 tgatagccaaggatgacttgcctg 24
||||||||||||||||||||||||
Sbjct: 142 tgatagccaaggatgacttgcctg 119
>RF00865;MIR169_5;AARH01009234.1/70247-70410 3694:Populus
trichocarpa
Length = 164
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1 tgatagccaaggatgacttgcctg 24
||||||||||||||||||||||||
Sbjct: 148 tgatagccaaggatgacttgcctg 125
>RF00865;MIR169_5;AASG02003941.1/7918-8066 3988:Ricinus communis
(castor bean)
Length = 149
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1 tgatagccaaggatgacttgcctg 24
||||||||||||||||||||||||
Sbjct: 133 tgatagccaaggatgacttgcctg 110
>RF00865;MIR169_5;AASG02003632.1/18586-18737 3988:Ricinus communis
(castor bean)
Length = 152
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1 tgatagccaaggatgacttgcctg 24
||||||||||||||||||||||||
Sbjct: 136 tgatagccaaggatgacttgcctg 113
>RF00865;MIR169_5;CAAP02000001.1/222751-222589 29760:Vitis vinifera
Length = 163
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1 tgatagccaaggatgacttgcctg 24
||||||||||||||||||||||||
Sbjct: 147 tgatagccaaggatgacttgcctg 124
>RF00645;MIR169_2;AARH01000583.1/30205-30349 3694:Populus
trichocarpa
Length = 145
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgatagccaaggatgacttgcctg 24
||||||||||||||||||||||||
Sbjct: 10 tgatagccaaggatgacttgcctg 33
>RF00645;MIR169_2;AC216452.1/111514-111664 3694:Populus
trichocarpa
Length = 151
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgatagccaaggatgacttgcctg 24
||||||||||||||||||||||||
Sbjct: 10 tgatagccaaggatgacttgcctg 33
>RF00645;MIR169_2;AASG02003632.1/18730-18592 3988:Ricinus communis
(castor bean)
Length = 139
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgatagccaaggatgacttgcctg 24
||||||||||||||||||||||||
Sbjct: 10 tgatagccaaggatgacttgcctg 33
>RF00645;MIR169_2;AASG02003941.1/8059-7924 3988:Ricinus communis
(castor bean)
Length = 136
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgatagccaaggatgacttgcctg 24
||||||||||||||||||||||||
Sbjct: 10 tgatagccaaggatgacttgcctg 33
>RF00645;MIR169_2;AM487000.2/29208-29357 29760:Vitis vinifera
Length = 150
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgatagccaaggatgacttgcctg 24
||||||||||||||||||||||||
Sbjct: 10 tgatagccaaggatgacttgcctg 33
>RF00865;MIR169_5;ABIM01022203.1/1489-1639 3649:Carica papaya
(papaya)
Length = 151
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 2 gatagccaaggatgacttgcctg 24
|||||||||||||||||||||||
Sbjct: 134 gatagccaaggatgacttgcctg 112
>RF00865;MIR169_5;AASG02006505.1/277-428 3988:Ricinus communis
(castor bean)
Length = 152
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 tgatagccaaggatgacttgcct 23
|||||||||||||||||||||||
Sbjct: 135 tgatagccaaggatgacttgcct 113
>RF00865;MIR169_5;CU468266.5/4267-4422 3880:Medicago truncatula
(barrel medic)
Length = 156
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 tgatagccaaggatgacttgcct 23
|||||||||||||||||||||||
Sbjct: 139 tgatagccaaggatgacttgcct 117
>RF00865;MIR169_5;EU968670.1/235-103 4577:Zea mays
Length = 133
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 4 tagccaaggatgacttgcctgtg 26
|||||||||||||||||||||||
Sbjct: 113 tagccaaggatgacttgcctgtg 91
>RF00865;MIR169_5;ABXC01001464.1/179344-179197 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 4 tagccaaggatgacttgcctgtg 26
|||||||||||||||||||||||
Sbjct: 128 tagccaaggatgacttgcctgtg 106
>RF00645;MIR169_2;ABIM01022203.1/1632-1495 3649:Carica papaya
(papaya)
Length = 138
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2 gatagccaaggatgacttgcctg 24
|||||||||||||||||||||||
Sbjct: 11 gatagccaaggatgacttgcctg 33
>RF00645;MIR169_2;AASG02006505.1/420-283 3988:Ricinus communis
(castor bean)
Length = 138
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgatagccaaggatgacttgcct 23
|||||||||||||||||||||||
Sbjct: 10 tgatagccaaggatgacttgcct 32
>RF00645;MIR169_2;CU468266.5/4414-4273 3880:Medicago truncatula
(barrel medic)
Length = 142
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgatagccaaggatgacttgcct 23
|||||||||||||||||||||||
Sbjct: 10 tgatagccaaggatgacttgcct 32
>RF00645;MIR169_2;EU968670.1/110-229 4577:Zea mays
Length = 120
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tagccaaggatgacttgcctgtg 26
|||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctgtg 36
>RF00645;MIR169_2;ABXC01001464.1/179202-179340 4558:Sorghum
bicolor (sorghum)
Length = 139
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tagccaaggatgacttgcctgtg 26
|||||||||||||||||||||||
Sbjct: 16 tagccaaggatgacttgcctgtg 38
>RF00865;MIR169_5;AY551203.1/210-25 3702:Arabidopsis thaliana (thale
cress)
Length = 186
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 3 atagccaaggatgacttgcctg 24
||||||||||||||||||||||
Sbjct: 168 atagccaaggatgacttgcctg 147
>RF00865;MIR169_5;AB016889.1/44658-44824 3702:Arabidopsis thaliana
(thale cress)
Length = 167
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 4 tagccaaggatgacttgcctgt 25
||||||||||||||||||||||
Sbjct: 148 tagccaaggatgacttgcctgt 127
>RF00865;MIR169_5;AASG02003941.1/7647-7771 3988:Ricinus communis
(castor bean)
Length = 125
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tgatagccaaggatgacttgcc 22
||||||||||||||||||||||
Sbjct: 109 tgatagccaaggatgacttgcc 88
>RF00865;MIR169_5;AACV01018924.1/12529-12684 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 4 tagccaaggatgacttgcctgt 25
||||||||||||||||||||||
Sbjct: 137 tagccaaggatgacttgcctgt 116
>RF00865;MIR169_5;AACV01009625.1/5578-5722 39947:Oryza sativa
Japonica Group
Length = 145
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 76 ataggcagtctccttggctagc 97
||||||||||||||||||||||
Sbjct: 40 ataggcagtctccttggctagc 19
>RF00645;MIR169_2;ABIM01014270.1/4373-4157 3649:Carica papaya
(papaya)
Length = 217
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 tagccaaggatgacttgcctgtgtcc 29
||||||||||||||||||||| ||||
Sbjct: 14 tagccaaggatgacttgcctgcgtcc 39
>RF00645;MIR169_2;AB016889.1/44816-44664 3702:Arabidopsis thaliana
(thale cress)
Length = 153
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 tagccaaggatgacttgcctgt 25
||||||||||||||||||||||
Sbjct: 12 tagccaaggatgacttgcctgt 33
>RF00645;MIR169_2;AY551203.1/30-206 3702:Arabidopsis thaliana
(thale cress)
Length = 177
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 atagccaaggatgacttgcctg 24
||||||||||||||||||||||
Sbjct: 14 atagccaaggatgacttgcctg 35
>RF00645;MIR169_2;AARH01001852.1/3885-3676 3694:Populus
trichocarpa
Length = 210
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 tagccaaggatgacttgcctgt 25
||||||||||||||||||||||
Sbjct: 13 tagccaaggatgacttgcctgt 34
>RF00645;MIR169_2;AASG02003941.1/7763-7653 3988:Ricinus communis
(castor bean)
Length = 111
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tgatagccaaggatgacttgcc 22
||||||||||||||||||||||
Sbjct: 9 tgatagccaaggatgacttgcc 30
>RF00645;MIR169_2;BT061088.1/1224-1114 4577:Zea mays
Length = 111
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 agccaaggatgacttgcctgtg 26
||||||||||||||||||||||
Sbjct: 1 agccaaggatgacttgcctgtg 22
>RF00645;MIR169_2;AP008210.1/19428619-19428750 39947:Oryza sativa
Japonica Group
Length = 132
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 ataggcagtctccttggctagc 97
||||||||||||||||||||||
Sbjct: 99 ataggcagtctccttggctagc 120
>RF00645;MIR169_2;AP008214.1/26806653-26806795 39947:Oryza sativa
Japonica Group
Length = 143
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 4 tagccaaggatgacttgcctgt 25
||||||||||||||||||||||
Sbjct: 13 tagccaaggatgacttgcctgt 34
