miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00865;MIR169_5;ABXC01005012.1/7179-7306 4558:Sorghum bicolor
(sorghum)
Length = 128
Score = 182 bits (92), Expect = 5e-46
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctatatcctctctaaaggatcagcaaatattgaggcttctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 tagccaaggatgacttgcctatatcctctctaaaggatcagcaaatattgaggcttctag 50
Query: 61 tggtctcatatgggcagtctccttggctagcc 92
||||||||||||||||||||||||||||||||
Sbjct: 49 tggtctcatatgggcagtctccttggctagcc 18
>RF00645;MIR169_2;ABXC01005012.1/7295-7185 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 182 bits (92), Expect = 5e-46
Identities = 92/92 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctatatcctctctaaaggatcagcaaatattgaggcttctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 tagccaaggatgacttgcctatatcctctctaaaggatcagcaaatattgaggcttctag 68
Query: 61 tggtctcatatgggcagtctccttggctagcc 92
||||||||||||||||||||||||||||||||
Sbjct: 69 tggtctcatatgggcagtctccttggctagcc 100
>RF00865;MIR169_5;ABXC01005012.1/10458-10330 4558:Sorghum bicolor
(sorghum)
Length = 129
Score = 121 bits (61), Expect = 2e-27
Identities = 85/92 (92%), Gaps = 2/92 (2%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctatatcctctctaaaggatcagcaaatattgaggcttctag 60
||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| ||
Sbjct: 107 tagccaaggatgacttgcctatatcctctatgaaggatcagcaaatatcgaggctttgag 48
Query: 61 tggtctcatatgggcagtctccttggctagcc 92
||||||| |||||||||||||||||||||||
Sbjct: 47 tggtctc--atgggcagtctccttggctagcc 18
>RF00645;MIR169_2;ABXC01005012.1/10344-10452 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 121 bits (61), Expect = 2e-27
Identities = 85/92 (92%), Gaps = 2/92 (2%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctatatcctctctaaaggatcagcaaatattgaggcttctag 60
||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| ||
Sbjct: 9 tagccaaggatgacttgcctatatcctctatgaaggatcagcaaatatcgaggctttgag 68
Query: 61 tggtctcatatgggcagtctccttggctagcc 92
||||||| |||||||||||||||||||||||
Sbjct: 69 tggtctc--atgggcagtctccttggctagcc 98
>RF00865;MIR169_5;AARH01006471.1/67165-67023 3694:Populus
trichocarpa
Length = 143
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctatatcctc 28
|||||||||||||||||||||| |||||
Sbjct: 121 tagccaaggatgacttgcctatttcctc 94
>RF00865;MIR169_5;AASG02006505.1/277-428 3988:Ricinus communis
(castor bean)
Length = 152
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctatatcctc 28
|||||||||||||||||||||| |||||
Sbjct: 132 tagccaaggatgacttgcctatttcctc 105
>RF00865;MIR169_5;AAAA02026107.1/14351-14478 39946:Oryza sativa
Indica Group
Length = 128
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctatatcctctctaaaggatcagcaa 44
|||||||||||||||||||| | ||||| || |||||| |||||
Sbjct: 108 tagccaaggatgacttgcctgtgtcctccctgaaggattagcaa 65
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 70 atgggcagtctccttggctagcc 92
|||||||||||||||||||||||
Sbjct: 40 atgggcagtctccttggctagcc 18
>RF00645;MIR169_2;AARH01006471.1/67030-67159 3694:Populus
trichocarpa
Length = 130
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctatatcctc 28
|||||||||||||||||||||| |||||
Sbjct: 16 tagccaaggatgacttgcctatttcctc 43
>RF00645;MIR169_2;AASG02006505.1/420-283 3988:Ricinus communis
(castor bean)
Length = 138
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctatatcctc 28
|||||||||||||||||||||| |||||
Sbjct: 13 tagccaaggatgacttgcctatttcctc 40
>RF00645;MIR169_2;AAAA02026107.1/14467-14357 39946:Oryza sativa
Indica Group
Length = 111
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctatatcctctctaaaggatcagcaa 44
|||||||||||||||||||| | ||||| || |||||| |||||
Sbjct: 10 tagccaaggatgacttgcctgtgtcctccctgaaggattagcaa 53
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 atgggcagtctccttggctagcc 92
|||||||||||||||||||||||
Sbjct: 78 atgggcagtctccttggctagcc 100
>RF00865;MIR169_5;ABXC01005011.1/62536-62662 4558:Sorghum bicolor
(sorghum)
Length = 127
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctatatcct 27
|||||||||||||||||||||| ||||
Sbjct: 107 tagccaaggatgacttgcctatgtcct 81
>RF00865;MIR169_5;AK240880.1/275-135 39947:Oryza sativa Japonica
Group
Length = 141
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 70 atgggcagtctccttggctagcc 92
|||||||||||||||||||||||
Sbjct: 40 atgggcagtctccttggctagcc 18
>RF00645;MIR169_2;CT835986.1/139-261 39946:Oryza sativa Indica Group
Length = 123
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 70 atgggcagtctccttggctagcc 92
|||||||||||||||||||||||
Sbjct: 90 atgggcagtctccttggctagcc 112
>RF00865;MIR169_5;CAAP02000122.1/24661-24522 29760:Vitis vinifera
Length = 140
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctatatcc 26
||||||||||||||||||||| ||||
Sbjct: 121 tagccaaggatgacttgcctaaatcc 96
>RF00865;MIR169_5;AACV01009625.1/5578-5722 39947:Oryza sativa
Japonica Group
Length = 145
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tagccaaggatgacttgcctat 22
||||||||||||||||||||||
Sbjct: 125 tagccaaggatgacttgcctat 104
>RF00645;MIR169_2;CAAP02000122.1/24529-24655 29760:Vitis vinifera
Length = 127
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctatatcc 26
||||||||||||||||||||| ||||
Sbjct: 13 tagccaaggatgacttgcctaaatcc 38
>RF00645;MIR169_2;BT062831.1/323-237 4577:Zea mays
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgcctatatcct 27
||||||||||||||||||||| ||||
Sbjct: 1 agccaaggatgacttgcctatgtcct 26
>RF00645;MIR169_2;ABXC01005011.1/62641-62556 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 2 agccaaggatgacttgcctatatcct 27
||||||||||||||||||||| ||||
Sbjct: 1 agccaaggatgacttgcctatgtcct 26
>RF00645;MIR169_2;AP008210.1/19428619-19428750 39947:Oryza sativa
Japonica Group
Length = 132
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tagccaaggatgacttgcctat 22
||||||||||||||||||||||
Sbjct: 14 tagccaaggatgacttgcctat 35
