miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54454_sbi-miR171c:pmrd
Length = 109
Score = 216 bits (109), Expect = 3e-57
Identities = 109/109 (100%)
Strand = Plus / Plus
Query: 1 agaacgagacgacatggcatggtattgacttggctcatctctcatccacagcaaacttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaacgagacgacatggcatggtattgacttggctcatctctcatccacagcaaacttca 60
Query: 61 caagtgcctgaggtgagccgagccaatatcacttcatgtcatctagcgt 109
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caagtgcctgaggtgagccgagccaatatcacttcatgtcatctagcgt 109
>55034_zma-miR171g:pmrd
Length = 112
Score = 131 bits (66), Expect = 1e-31
Identities = 101/112 (90%), Gaps = 3/112 (2%)
Strand = Plus / Plus
Query: 1 agaacgagacgacatggcatggtattgacttggctcatctctcatccacagcaaacttca 60
|||||||| |||||||||||||||||||||||||||||||||| ||||| || | | ||
Sbjct: 1 agaacgaggcgacatggcatggtattgacttggctcatctctcgcccacaccagaatcca 60
Query: 61 caagtgcc---tgaggtgagccgagccaatatcacttcatgtcatctagcgt 109
|||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caagtgccggaggaggtgagccgagccaatatcacttcatgtcatctagcgt 112
>48901_osa-miR171g:pmrd
Length = 89
Score = 79.8 bits (40), Expect = 4e-16
Identities = 80/91 (87%), Gaps = 3/91 (3%)
Strand = Plus / Plus
Query: 11 gacatggcatggtattgacttggctcatctctcatccacagcaaacttca-caagtgcct 69
||||||||||||||||||||||||||| ||||| | |||||||||| || || ||
Sbjct: 1 gacatggcatggtattgacttggctca--tctcagcaacagcaaactgcatgcagcgctg 58
Query: 70 gaggtgagccgagccaatatcacttcatgtc 100
|||||||||||||||||||||||||||||||
Sbjct: 59 gaggtgagccgagccaatatcacttcatgtc 89
