miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54455_sbi-miR171d:pmrd
Length = 154
Score = 303 bits (153), Expect = 2e-83
Identities = 153/153 (100%)
Strand = Plus / Plus
Query: 1 ataatggaatagtagctatgatgttggctcggctcactcagaccacctctccgatcctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ataatggaatagtagctatgatgttggctcggctcactcagaccacctctccgatcctca 61
Query: 61 gctcgtgtccattgcgacatcgatcatgtatatatgtcgctggtcgtggtttctgattga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 gctcgtgtccattgcgacatcgatcatgtatatatgtcgctggtcgtggtttctgattga 121
Query: 121 gccgtgccaatatctcagtactcttccatatat 153
|||||||||||||||||||||||||||||||||
Sbjct: 122 gccgtgccaatatctcagtactcttccatatat 154
>55032_zma-miR171e:pmrd
Length = 126
Score = 81.8 bits (41), Expect = 1e-16
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 3 aatggaatagtagctatgatgttggctcggctcactcagac 43
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 aatggaatagtagctatgatgttggctcggctcactcagac 44
Score = 73.8 bits (37), Expect = 3e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 109 gtttctgattgagccgtgccaatatctcagtactcttccat 149
||||||||||||||||||||||||||| |||||||||||||
Sbjct: 82 gtttctgattgagccgtgccaatatcttagtactcttccat 122
>55031_zma-miR171d:pmrd
Length = 121
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 109 gtttctgattgagccgtgccaatatctcagtactctt 145
|||||||||||||||||||||||||||||||||||||
Sbjct: 77 gtttctgattgagccgtgccaatatctcagtactctt 113
Score = 48.1 bits (24), Expect = 2e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 3 aatggaatagtagctatgatgttggctcggctcactcaga 42
||||||| ||| ||||| |||||||||||||||||||||
Sbjct: 4 aatggaagtgtaactatggtgttggctcggctcactcaga 43
>48899_osa-miR171e:pmrd
Length = 119
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 12 gtagctatgatgttggctcggctcactcagac 43
||||||||||||||||||||||||||||||||
Sbjct: 3 gtagctatgatgttggctcggctcactcagac 34
Score = 56.0 bits (28), Expect = 8e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 109 gtttctgattgagccgtgccaatatctcagtactct 144
||||||||||||||||||||||||||| ||| ||||
Sbjct: 84 gtttctgattgagccgtgccaatatcttagtgctct 119
>51692_ptc-miR171i:pmrd
Length = 129
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatctcagtactc 143
||||||||||||||||||||||||||||||
Sbjct: 100 tgattgagccgtgccaatatctcagtactc 129
>46977_ath-miR171a:pmrd
Length = 123
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 112 tctgattgagccgtgccaatatctcagtactct 144
||||||||||||| |||||||||||||||||||
Sbjct: 86 tctgattgagccgcgccaatatctcagtactct 118
>48898_osa-miR171d:pmrd
Length = 135
Score = 56.0 bits (28), Expect = 8e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 111 ttctgattgagccgtgccaatatctcag 138
||||||||||||||||||||||||||||
Sbjct: 102 ttctgattgagccgtgccaatatctcag 129
Score = 54.0 bits (27), Expect = 3e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 12 gtagctatgatgttggctcggctcactcaga 42
||||||||||||||||| |||||||||||||
Sbjct: 3 gtagctatgatgttggcccggctcactcaga 33
>54460_sbi-miR171i:pmrd
Length = 90
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 109 gtttctgattgagccgtgccaatatct 135
|||||||||||||||||||||||||||
Sbjct: 63 gtttctgattgagccgtgccaatatct 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 22 tgttggctcggctcactcaga 42
|||||||||||||||||||||
Sbjct: 2 tgttggctcggctcactcaga 22
>54551_sly-miR171a:pmrd
Length = 122
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatctcagt 139
||||||||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatctcagt 112
>48905_osa-miR171n:pmrd
Length = 99
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 109 gtttctgattgagccgtgccaatatc 134
||||||||||||||||||||||||||
Sbjct: 74 gtttctgattgagccgtgccaatatc 99
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 gatgttggctcggctcactcagac 43
||||||||||||||||||||||||
Sbjct: 1 gatgttggctcggctcactcagac 24
>48893_osa-miR170a:pmrd
Length = 99
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 109 gtttctgattgagccgtgccaatatc 134
||||||||||||||||||||||||||
Sbjct: 74 gtttctgattgagccgtgccaatatc 99
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 gatgttggctcggctcactcagac 43
||||||||||||||||||||||||
Sbjct: 1 gatgttggctcggctcactcagac 24
>48407_bra-miR171e:pmrd
Length = 119
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 112 tctgattgagccgtgccaatatctcagtactct 144
||||||||||||| |||||||||||||| ||||
Sbjct: 82 tctgattgagccgcgccaatatctcagtgctct 114
>48369_bna-miR171g:pmrd
Length = 115
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 112 tctgattgagccgtgccaatatctcagtactct 144
||||||||||||| |||||||||||||| ||||
Sbjct: 76 tctgattgagccgcgccaatatctcagtgctct 108
>48368_bna-miR171f:pmrd
Length = 119
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 112 tctgattgagccgtgccaatatctcagtactct 144
||||||||||||| |||||||||||||| ||||
Sbjct: 82 tctgattgagccgcgccaatatctcagtgctct 114
>54830_vvi-miR171c:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 107 tggtttctgattgagccgtgccaatatc 134
|||||| |||||||||||||||||||||
Sbjct: 63 tggtttttgattgagccgtgccaatatc 90
>51689_ptc-miR171f:pmrd
Length = 130
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 112 tctgattgagccgtgccaatatct 135
||||||||||||||||||||||||
Sbjct: 99 tctgattgagccgtgccaatatct 122
>48723_mtr-miR171g:pmrd
Length = 105
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatctca 137
||||||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatctca 103
>48722_mtr-miR171d:pmrd
Length = 105
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatctca 137
||||||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatctca 103
>48663_hvv-miR171:pmrd
Length = 78
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 111 ttctgattgagccgtgccaatatc 134
||||||||||||||||||||||||
Sbjct: 55 ttctgattgagccgtgccaatatc 78
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 20 gatgttggctcggctcactcagaccac 46
|||||||||||| ||||||||||||||
Sbjct: 1 gatgttggctcgactcactcagaccac 27
>48662_hvv-miR170:pmrd
Length = 78
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 111 ttctgattgagccgtgccaatatc 134
||||||||||||||||||||||||
Sbjct: 55 ttctgattgagccgtgccaatatc 78
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 20 gatgttggctcggctcactcagaccac 46
|||||||||||| ||||||||||||||
Sbjct: 1 gatgttggctcgactcactcagaccac 27
>55037_zma-miR171j:pmrd
Length = 129
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 tctgattgagccgtgccaatatc 134
|||||||||||||||||||||||
Sbjct: 88 tctgattgagccgtgccaatatc 110
>54836_vvi-miR171i:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 tctgattgagccgtgccaatatc 134
|||||||||||||||||||||||
Sbjct: 67 tctgattgagccgtgccaatatc 89
>54828_vvi-miR171a:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 tctgattgagccgtgccaatatc 134
|||||||||||||||||||||||
Sbjct: 66 tctgattgagccgtgccaatatc 88
>54680_tae-miR170b:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 20 gatgttggctcggctcactcagaccac 46
|||||||||||| ||||||||||||||
Sbjct: 1 gatgttggctcgactcactcagaccac 27
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 tctgattgagccgtgccaatatc 134
|||||||||||||||||||||||
Sbjct: 72 tctgattgagccgtgccaatatc 94
>54453_sbi-miR171b:pmrd
Length = 132
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 tctgattgagccgtgccaatatc 134
|||||||||||||||||||||||
Sbjct: 91 tctgattgagccgtgccaatatc 113
>52725_ptc-miRf10903-akr:pmrd
Length = 85
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 tctgattgagccgtgccaatatc 134
|||||||||||||||||||||||
Sbjct: 58 tctgattgagccgtgccaatatc 80
>51691_ptc-miR171h:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 tctgattgagccgtgccaatatc 134
|||||||||||||||||||||||
Sbjct: 69 tctgattgagccgtgccaatatc 91
>51690_ptc-miR171g:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 tctgattgagccgtgccaatatc 134
|||||||||||||||||||||||
Sbjct: 69 tctgattgagccgtgccaatatc 91
>51688_ptc-miR171e:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 tctgattgagccgtgccaatatc 134
|||||||||||||||||||||||
Sbjct: 63 tctgattgagccgtgccaatatc 85
>49676_osa-miRf10461-akr:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 tctgattgagccgtgccaatatc 134
|||||||||||||||||||||||
Sbjct: 93 tctgattgagccgtgccaatatc 115
>48904_osa-miR171m:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 tctgattgagccgtgccaatatc 134
|||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatc 107
>48900_osa-miR171f:pmrd
Length = 127
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 tctgattgagccgtgccaatatc 134
|||||||||||||||||||||||
Sbjct: 95 tctgattgagccgtgccaatatc 117
>48894_osa-miR170b:pmrd
Length = 107
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 tctgattgagccgtgccaatatc 134
|||||||||||||||||||||||
Sbjct: 85 tctgattgagccgtgccaatatc 107
>46877_aqc-miR171b:pmrd
Length = 77
Score = 46.1 bits (23), Expect = 8e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 112 tctgattgagccgtgccaatatc 134
|||||||||||||||||||||||
Sbjct: 53 tctgattgagccgtgccaatatc 75
>46879_aqc-miR171d:pmrd
Length = 106
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatct 135
||||||||||||||||||||||
Sbjct: 84 tgattgagccgtgccaatatct 105
>46876_aqc-miR171a:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatct 135
||||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatct 101
>55039_zma-miR171m:pmrd
Length = 113
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatc 113
>55036_zma-miR171i:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 65 tgattgagccgtgccaatatc 85
>55033_zma-miR171f:pmrd
Length = 155
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 115 tgattgagccgtgccaatatc 135
>55029_zma-miR171b:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatc 82
>55024_zma-miR170m:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 95 tgattgagccgtgccaatatc 115
>54831_vvi-miR171d:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatc 87
>54462_sbi-miR171k:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatc 82
>54452_sbi-miR171a:pmrd
Length = 161
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 122 tgattgagccgtgccaatatc 142
>51882_ptc-miRf10060-akr:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 63 tgattgagccgtgccaatatc 83
>51685_ptc-miR171b:pmrd
Length = 103
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 71 tgattgagccgtgccaatatc 91
>51684_ptc-miR171a:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 72 tgattgagccgtgccaatatc 92
>51346_ppe-miR171:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatc 87
>51345_ppe-miR170:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatc 87
>48897_osa-miR171c:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 69 tgattgagccgtgccaatatc 89
>48896_osa-miR171b:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 70 tgattgagccgtgccaatatc 90
>48895_osa-miR171a:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 112 tctgattgagccgtgccaatatctc 136
||||||||||||| |||||||||||
Sbjct: 65 tctgattgagccgcgccaatatctc 89
>48403_bra-miR171a:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 62 tgattgagccgtgccaatatc 82
>48386_bol-miR171a:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>48367_bna-miR171e:pmrd
Length = 92
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 67 tgattgagccgtgccaatatc 87
>48366_bna-miR171d:pmrd
Length = 96
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>48312_bdi-miR171c:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 64 tgattgagccgtgccaatatc 84
>46979_ath-miR171c:pmrd
Length = 116
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>46880_aqc-miR171e:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 114 tgattgagccgtgccaatatc 134
|||||||||||||||||||||
Sbjct: 21 tgattgagccgtgccaatatc 1
