miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54456_sbi-miR171e:pmrd
Length = 124
Score = 246 bits (124), Expect = 3e-66
Identities = 124/124 (100%)
Strand = Plus / Plus
Query: 1 aggaggaagaagacgacatggcgtggtattgtttcggctcatgtccttcttgcttcgagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggaggaagaagacgacatggcgtggtattgtttcggctcatgtccttcttgcttcgagt 60
Query: 61 ctgtcgtcggattttggatgtgatgtgagccgaaccaatatcactcatgtattcttcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctgtcgtcggattttggatgtgatgtgagccgaaccaatatcactcatgtattcttcatt 120
Query: 121 ctga 124
||||
Sbjct: 121 ctga 124
>55035_zma-miR171h:pmrd
Length = 124
Score = 153 bits (77), Expect = 4e-38
Identities = 112/121 (92%), Gaps = 2/121 (1%)
Strand = Plus / Plus
Query: 2 ggaggaagaagacgacatggcgtggtattgtttcggctcatgtccttcttgcttcgagtc 61
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2 ggaggaaggagacgacatggcgtggtattgtttcggctcatgtccttcttcgatcgagtc 61
Query: 62 -tgtcgtcggattttggatgtgatgtgagccgaaccaatatcactcatgtattcttcatt 120
|| ||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 62 ttgccgttgga-tttggatgtgatgtgagccgaaccaatatcactcatgtactcttcatt 120
Query: 121 c 121
|
Sbjct: 121 c 121
>55038_zma-miR171k:pmrd
Length = 104
Score = 101 bits (51), Expect = 1e-22
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 2 ggaggaagaagacgacatggcgtggtattgtttcggctcatgtccttcttg 52
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 ggaggaagaagacgacatggcgtggtattgtttcggctcatgtccttcttg 52
Score = 99.6 bits (50), Expect = 5e-22
Identities = 50/50 (100%)
Strand = Plus / Plus
Query: 75 tggatgtgatgtgagccgaaccaatatcactcatgtattcttcattctga 124
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55 tggatgtgatgtgagccgaaccaatatcactcatgtattcttcattctga 104
>48902_osa-miR171h:pmrd
Length = 101
Score = 79.8 bits (40), Expect = 4e-16
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 82 gatgtgagccgaaccaatatcactcatgtattcttcattc 121
||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 gatgtgagccgaaccaatatcactcatgtattcttcattc 90
Score = 56.0 bits (28), Expect = 6e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 6 gaagaagacgacatggcgtggtattgtttcggctcatgtc 45
|||||||| ||||||| ||||||||||||||||||||||
Sbjct: 2 gaagaagaggacatggtttggtattgtttcggctcatgtc 41
>54457_sbi-miR171f:pmrd
Length = 119
Score = 71.9 bits (36), Expect = 1e-13
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 86 tgagccgaaccaatatcactcatgtattcttcattc 121
||||||||||||||||||||||||||||||||||||
Sbjct: 81 tgagccgaaccaatatcactcatgtattcttcattc 116
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 10 aagacgacatggcgtggtattgtttcggctcatg 43
|||||||||||||||| | |||||||||||||||
Sbjct: 10 aagacgacatggcgtgatgttgtttcggctcatg 43
>54894_vvi-miR479:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 87 gagccgaaccaatatcactcatgtattcttc 117
|||||||||||||||||||| ||||| ||||
Sbjct: 64 gagccgaaccaatatcactcttgtatgcttc 94
>51696_ptc-miR171m:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 15 gacatggcgtggtattgtttcggctcat 42
||||||||||||||||| | ||||||||
Sbjct: 7 gacatggcgtggtattgatccggctcat 34
