miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00692;MIR171_2;ABXC01004402.1/43379-43494 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 230 bits (116), Expect = 3e-60
Identities = 116/116 (100%)
Strand = Plus / Plus
Query: 5 ggaagaagacgacatggcgtggtattgtttcggctcatgtccttcttgcttcgagtctgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggaagaagacgacatggcgtggtattgtttcggctcatgtccttcttgcttcgagtctgt 60
Query: 65 cgtcggattttggatgtgatgtgagccgaaccaatatcactcatgtattcttcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgtcggattttggatgtgatgtgagccgaaccaatatcactcatgtattcttcatt 116
>RF00692;MIR171_2;AACV01010311.1/27668-27580 39947:Oryza sativa
Japonica Group
Length = 89
Score = 77.8 bits (39), Expect = 3e-14
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 82 gatgtgagccgaaccaatatcactcatgtattcttcatt 120
|||||||||||||||||||||||||||||||||||||||
Sbjct: 51 gatgtgagccgaaccaatatcactcatgtattcttcatt 89
Score = 56.0 bits (28), Expect = 1e-07
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 6 gaagaagacgacatggcgtggtattgtttcggctcatgtc 45
|||||||| ||||||| ||||||||||||||||||||||
Sbjct: 2 gaagaagaggacatggtttggtattgtttcggctcatgtc 41
>RF00692;MIR171_2;ABXC01002937.1/36819-36709 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 69.9 bits (35), Expect = 8e-12
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 86 tgagccgaaccaatatcactcatgtattcttcatt 120
|||||||||||||||||||||||||||||||||||
Sbjct: 77 tgagccgaaccaatatcactcatgtattcttcatt 111
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 10 aagacgacatggcgtggtattgtttcggctcatg 43
|||||||||||||||| | |||||||||||||||
Sbjct: 6 aagacgacatggcgtgatgttgtttcggctcatg 39
>RF00692;MIR171_2;CAAP02000606.1/45780-45883 29760:Vitis vinifera
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 87 gagccgaaccaatatcactcatgtattcttc 117
|||||||||||||||||||| ||||| ||||
Sbjct: 71 gagccgaaccaatatcactcttgtatgcttc 101
