miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AP003573.3/25796-25895 39947:Oryza sativa
Japonica Group
Length = 100
Score = 105 bits (53), Expect = 8e-23
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 tattggtgaggttcaatccgatgataggttttacaaacagctgtaaaatcagtatctgat 60
||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct: 13 tattggtgaggttcaatccgatgattggttttacag-cagtggtaaaatcagtatctgat 71
Query: 61 tgagccgcgccaatatc 77
|||||||||||||||||
Sbjct: 72 tgagccgcgccaatatc 88
>RF00643;MIR171_1;AC189627.2/36180-36072 51351:Brassica rapa
subsp. pekinensis
Length = 109
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tatctgattgagccgcgccaatatc 77
|||||||||||||||||||||||||
Sbjct: 73 tatctgattgagccgcgccaatatc 97
>RF00643;MIR171_1;EU549097.1/220-333 3702:Arabidopsis thaliana
(thale cress)
Length = 114
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 tatctgattgagccgcgccaatatc 77
|||||||||||||||||||||||||
Sbjct: 78 tatctgattgagccgcgccaatatc 102
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 atctgattgagccgcgccaatatc 77
||||||||||||||||||||||||
Sbjct: 67 atctgattgagccgcgccaatatc 90
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tctgattgagccgcgccaatatc 77
|||||||||||||||||||||||
Sbjct: 67 tctgattgagccgcgccaatatc 89
>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 ctgattgagccgcgccaatatc 77
||||||||||||||||||||||
Sbjct: 86 ctgattgagccgcgccaatatc 107
>RF00643;MIR171_1;ABIM01001615.1/3078-3177 3649:Carica papaya
(papaya)
Length = 100
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgcgccaatatc 77
|||||||||||||||||||||
Sbjct: 68 tgattgagccgcgccaatatc 88
>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
Length = 101
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgcgccaatatc 77
|||||||||||||||||||||
Sbjct: 69 tgattgagccgcgccaatatc 89
