miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54459_sbi-miR171h:pmrd
Length = 81
Score = 161 bits (81), Expect = 9e-41
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 ggtattggcgcgcctcaatccgaaggcgtggctgatttggcatggcagccatgttcttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggtattggcgcgcctcaatccgaaggcgtggctgatttggcatggcagccatgttcttgg 60
Query: 61 attgagccgcgtcaatatctc 81
|||||||||||||||||||||
Sbjct: 61 attgagccgcgtcaatatctc 81
>48903_osa-miR171i:pmrd
Length = 120
Score = 60.0 bits (30), Expect = 2e-10
Identities = 37/38 (97%), Gaps = 1/38 (2%)
Strand = Plus / Plus
Query: 45 gcagccatgtt-cttggattgagccgcgtcaatatctc 81
||||||||||| ||||||||||||||||||||||||||
Sbjct: 73 gcagccatgtttcttggattgagccgcgtcaatatctc 110
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 ggtattggcgcgcctcaatccgaaggcgtggctgatt 37
|||||||||| |||||||||||||||| |||||||||
Sbjct: 9 ggtattggcgtgcctcaatccgaaggcatggctgatt 45
>54829_vvi-miR171b:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 47 agccatgttcttggattgagccgcgtcaatatctc 81
|||||||| || ||||||||||||||||||||||
Sbjct: 57 agccatgtgatttgattgagccgcgtcaatatctc 91
>51694_ptc-miR171k:pmrd
Length = 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 57 ttggattgagccgcgtcaatatc 79
||||||||||||||| |||||||
Sbjct: 56 ttggattgagccgcgccaatatc 78
>48566_gma-miR170n:pmrd
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 61 attgagccgcgtcaatatc 79
|||||||||||||||||||
Sbjct: 62 attgagccgcgtcaatatc 80
