miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;ABXC01000976.1/316269-316174 4558:Sorghum bicolor
(sorghum)
Length = 96
Score = 190 bits (96), Expect = 3e-48
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 11 ctctctgcaggtgcagcagcatcaaggttcgccagcagcaagcgatcgatcgaggcgtgt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctctctgcaggtgcagcagcatcaaggttcgccagcagcaagcgatcgatcgaggcgtgt 60
Query: 71 gtgtgtgaatcttgatgatgctgcaccagcaatgag 106
||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtgtgtgaatcttgatgatgctgcaccagcaatgag 96
>RF00452;mir-172;EU869090.1/178-288 39946:Oryza sativa Indica Group
Length = 111
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 75 gtgaatcttgatgatgctgcaccagcaa 102
||||||||||||||||||||||||||||
Sbjct: 80 gtgaatcttgatgatgctgcaccagcaa 107
>RF00452;mir-172;ABIM01046937.1/220-46 3649:Carica papaya (papaya)
Length = 175
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 74 tgtgaatcttgatgatgctgcaccagcaa 102
||||||||| |||||||||||||||||||
Sbjct: 33 tgtgaatctcgatgatgctgcaccagcaa 5
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 74 tgtgaatcttgatgatgctgcaccagcaa 102
||||||||| |||||||||||||||||||
Sbjct: 33 tgtgaatctcgatgatgctgcaccagcaa 5
>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
trichocarpa
Length = 130
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 74 tgtgaatcttgatgatgctgcaccagcaa 102
|||||||||||||||||||||||| ||||
Sbjct: 33 tgtgaatcttgatgatgctgcacctgcaa 5
>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
trichocarpa
Length = 129
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 74 tgtgaatcttgatgatgctgcaccagcaa 102
|||||||||||||||||||||||| ||||
Sbjct: 33 tgtgaatcttgatgatgctgcacctgcaa 5
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 74 tgtgaatcttgatgatgctgcaccagcaa 102
||||||||||||||||||| |||||||||
Sbjct: 33 tgtgaatcttgatgatgctccaccagcaa 5
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 74 tgtgaatcttgatgatgctgcaccagcaa 102
|||||||||||||||||||||||| ||||
Sbjct: 33 tgtgaatcttgatgatgctgcacctgcaa 5
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 gaatcttgatgatgctgcaccagcaa 102
||||||||||||||||||| ||||||
Sbjct: 93 gaatcttgatgatgctgcatcagcaa 118
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 70 tgtgtgtgaatcttgatgatgctgcacc 97
|||||||||||||||||| |||||||||
Sbjct: 37 tgtgtgtgaatcttgatggtgctgcacc 10
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 gaatcttgatgatgctgcaccagcaat 103
||||||||||||||||||| |||||||
Sbjct: 61 gaatcttgatgatgctgcatcagcaat 87
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 73 gtgtgaatcttgatgatgctgcaccagc 100
||||||||||||||||||||||| ||||
Sbjct: 34 gtgtgaatcttgatgatgctgcatcagc 7
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 77 gaatcttgatgatgctgcaccagcaat 103
||||||||||||||||||| |||||||
Sbjct: 130 gaatcttgatgatgctgcatcagcaat 156
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 gaatcttgatgatgctgcaccagcaa 102
||||||||||||||||||| ||||||
Sbjct: 68 gaatcttgatgatgctgcatcagcaa 93
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 gaatcttgatgatgctgcaccagcaa 102
||||||||||||||||||| ||||||
Sbjct: 96 gaatcttgatgatgctgcatcagcaa 121
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 gaatcttgatgatgctgcaccagcaa 102
||||||||||||||||||| ||||||
Sbjct: 114 gaatcttgatgatgctgcatcagcaa 139
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 72 tgtgtgaatcttgatgatgctgcacc 97
|||||||||||| |||||||||||||
Sbjct: 35 tgtgtgaatcttaatgatgctgcacc 10
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 gaatcttgatgatgctgcaccagcaa 102
||||||||||||||||||| ||||||
Sbjct: 139 gaatcttgatgatgctgcatcagcaa 164
>RF00452;mir-172;AC165172.2/39243-39397 4577:Zea mays
Length = 155
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 70 tgtgtgtgaatcttgatgatgctgca 95
|||||| |||||||||||||||||||
Sbjct: 119 tgtgtgggaatcttgatgatgctgca 144
>RF00452;mir-172;EU974220.1/371-523 4577:Zea mays
Length = 153
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 70 tgtgtgtgaatcttgatgatgctgca 95
|||||| |||||||||||||||||||
Sbjct: 117 tgtgtgggaatcttgatgatgctgca 142
>RF00452;mir-172;ABXC01002369.1/66790-66601 4558:Sorghum bicolor
(sorghum)
Length = 190
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 70 tgtgtgtgaatcttgatgatgctgca 95
|||||| |||||||||||||||||||
Sbjct: 154 tgtgtgggaatcttgatgatgctgca 179
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 77 gaatcttgatgatgctgcaccagcaa 102
||||||||||||||||||| ||||||
Sbjct: 83 gaatcttgatgatgctgcatcagcaa 108
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 70 tgtgtgtgaatcttgatgatgctgca 95
|||||| |||||||||||||||||||
Sbjct: 202 tgtgtgggaatcttgatgatgctgca 227
