miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54468_sbi-miR319:pmrd
Length = 249
Score = 494 bits (249), Expect = e-140
Identities = 249/249 (100%)
Strand = Plus / Plus
Query: 1 ctgccgccatggttgtgatatggccggatggaagagagcgtccttcagtccactcagggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgccgccatggttgtgatatggccggatggaagagagcgtccttcagtccactcagggg 60
Query: 61 cggtgctagggtcgaattagctgccgactcattcacccacatgccaagcaaacggccatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cggtgctagggtcgaattagctgccgactcattcacccacatgccaagcaaacggccatg 120
Query: 121 gaaacgagctagctttgcagatgagtgaatgaagcgggaggtaaaagcttcgatctcgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaaacgagctagctttgcagatgagtgaatgaagcgggaggtaaaagcttcgatctcgca 180
Query: 181 ccatctttgcttggactgaagggtgctccctcctcccctccttaattgtttactttaccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccatctttgcttggactgaagggtgctccctcctcccctccttaattgtttactttaccc 240
Query: 241 atggcgcag 249
|||||||||
Sbjct: 241 atggcgcag 249
>55050_zma-miR319b:pmrd
Length = 213
Score = 335 bits (169), Expect = 1e-92
Identities = 191/198 (96%), Gaps = 4/198 (2%)
Strand = Plus / Plus
Query: 20 atggccggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaatta 79
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 atggctggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaatta 67
Query: 80 gctgccgactcattcacccacatgccaagcaaacggccatggaaacgagctagctttgca 139
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 68 gctgccgactcattcacccacatgccaagcaaacggccatggaaa----ccagctttgca 123
Query: 140 gatgagtgaatgaagcgggaggtaaaagcttcgatctcgcaccatctttgcttggactga 199
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 124 gatgagtgaatgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactga 183
Query: 200 agggtgctccctcctccc 217
||||||||||||||||||
Sbjct: 184 agggtgctccctcctccc 201
>55052_zma-miR319d:pmrd
Length = 212
Score = 323 bits (163), Expect = 4e-89
Identities = 185/192 (96%), Gaps = 4/192 (2%)
Strand = Plus / Plus
Query: 22 ggccggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagc 81
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 9 ggccggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcggattagc 68
Query: 82 tgccgactcattcacccacatgccaagcaaacggccatggaaacgagctagctttgcaga 141
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 69 tgccgactcattcacccacatgccaagcaaacggccatggaaacg----agcttcgcaga 124
Query: 142 tgagtgaatgaagcgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaag 201
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 125 tgagtgaatgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaag 184
Query: 202 ggtgctccctcc 213
||||||||||||
Sbjct: 185 ggtgctccctcc 196
>55053_zma-miR319e:pmrd
Length = 173
Score = 293 bits (148), Expect = 3e-80
Identities = 170/177 (96%), Gaps = 4/177 (2%)
Strand = Plus / Plus
Query: 34 gagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactcatt 93
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 gagagcgtccttcagtccactcaggggcggtgctagggtcggattagctgccgactcatt 60
Query: 94 cacccacatgccaagcaaacggccatggaaacgagctagctttgcagatgagtgaatgaa 153
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 61 cacccacatgccaagcaaacggccatggaaacg----agcttcgcagatgagtgaatgaa 116
Query: 154 gcgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaagggtgctccc 210
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 117 gcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctccc 173
>48915_osa-miR319b:pmrd
Length = 197
Score = 198 bits (100), Expect = 1e-51
Identities = 172/192 (89%), Gaps = 3/192 (1%)
Strand = Plus / Plus
Query: 26 ggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgcc 85
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 4 ggatggaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgcc 63
Query: 86 gactcattcacccacatgccaagcaaacggccatggaaacgagc-tagctttgcagatga 144
|||||||||||||||||||||||||| | | || | ||| ||||| ||||||||
Sbjct: 64 gactcattcacccacatgccaagcaagaaacgcttgaga-tagcgaagcttagcagatga 122
Query: 145 gtgaatgaagcgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaagggt 204
|||||||||||||||||| || | | ||||||||| || |||||||||||||||||||||
Sbjct: 123 gtgaatgaagcgggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggt 181
Query: 205 gctccctcctcc 216
||||||||||||
Sbjct: 182 gctccctcctcc 193
>54642_sof-miR319a:pmrd
Length = 539
Score = 65.9 bits (33), Expect = 1e-11
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 191 ttggactgaagggtgctccctcctcccctccttaattgtttactttacccatg 243
||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 1 ttggactgaagggtgctccctcctcccggcctcctttgtttactttacccatg 53
>54844_vvi-miR319c:pmrd
Length = 182
Score = 58.0 bits (29), Expect = 3e-09
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 31 gaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactc 90
||||||||| | |||||||||||||| ||| || |||| | |||||||||||||||||
Sbjct: 8 gaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactc 67
Query: 91 attca 95
|||||
Sbjct: 68 attca 72
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 188 tgcttggactgaagggtgctccct 211
|||||||||||||||| |||||||
Sbjct: 148 tgcttggactgaagggagctccct 171
>51707_ptc-miR319a:pmrd
Length = 188
Score = 56.0 bits (28), Expect = 1e-08
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 32 aagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactca 91
|||||||| | |||||||||||||| ||| ||| |||| | |||||||||||||||||
Sbjct: 9 aagagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactca 68
Query: 92 ttca 95
||||
Sbjct: 69 ttca 72
>51712_ptc-miR319f:pmrd
Length = 202
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 69 gggtcgaattagctgccgactcattca 95
|||| ||||||||||||||||||||||
Sbjct: 49 gggttgaattagctgccgactcattca 75
>51351_ppl-miR319:pmrd
Length = 204
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 74 gaattagctgccgactcattca 95
||||||||||||||||||||||
Sbjct: 53 gaattagctgccgactcattca 74
>48694_mma-miR159:pmrd
Length = 192
Score = 44.1 bits (22), Expect = 5e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 184 tctttgcttggactgaagggtgctccctcc 213
|||||| ||||||||||||| |||||||||
Sbjct: 154 tctttgattggactgaagggagctccctcc 183
>48573_gma-miR319b:pmrd
Length = 208
Score = 44.1 bits (22), Expect = 5e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 75 aattagctgccgactcattcacccacatgc 104
||||||||||||||||||||| ||| ||||
Sbjct: 63 aattagctgccgactcattcatccaaatgc 92
>55051_zma-miR319c:pmrd
Length = 216
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 ttggactgaagggtgctccct 211
|||||||||||||||||||||
Sbjct: 178 ttggactgaagggtgctccct 198
>55049_zma-miR319a:pmrd
Length = 209
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 ttggactgaagggtgctccct 211
|||||||||||||||||||||
Sbjct: 171 ttggactgaagggtgctccct 191
>54846_vvi-miR319f:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 32 aagagagcgtccttcagtccactca 56
|||||||| ||||||||||||||||
Sbjct: 9 aagagagcttccttcagtccactca 33
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 76 attagctgccgactcattca 95
||||||||||||||||||||
Sbjct: 54 attagctgccgactcattca 73
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 188 tgcttggactgaagggtgctccct 211
|||||||||||||||| |||||||
Sbjct: 159 tgcttggactgaagggagctccct 182
>54469_sbi-miR319b:pmrd
Length = 179
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 ttggactgaagggtgctccct 211
|||||||||||||||||||||
Sbjct: 158 ttggactgaagggtgctccct 178
>48914_osa-miR319a:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 ttggactgaagggtgctccct 211
|||||||||||||||||||||
Sbjct: 162 ttggactgaagggtgctccct 182
>48572_gma-miR319a:pmrd
Length = 207
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 75 aattagctgccgactcattca 95
|||||||||||||||||||||
Sbjct: 62 aattagctgccgactcattca 82
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 137 gcagatgagtgaatgaagcgggag 160
|||||||||||||||| |||||||
Sbjct: 118 gcagatgagtgaatgatgcgggag 141
>48479_fal-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 tctttgcttggactgaagggtgctccctc 212
|||||| ||||||||||||| ||||||||
Sbjct: 154 tctttgattggactgaagggagctccctc 182
>48476_dso-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 tctttgcttggactgaagggtgctccctc 212
|||||| ||||||||||||| ||||||||
Sbjct: 154 tctttgattggactgaagggagctccctc 182
Score = 40.1 bits (20), Expect = 8e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 75 aattagctgccgactcattcacccacat 102
|||||||| |||||||||||| ||||||
Sbjct: 52 aattagcttccgactcattcatccacat 79
>48422_cor-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 tctttgcttggactgaagggtgctccctc 212
|||||| ||||||||||||| ||||||||
Sbjct: 155 tctttgattggactgaagggagctccctc 183
>48421_cmi-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 tctttgcttggactgaagggtgctccctc 212
|||||| ||||||||||||| ||||||||
Sbjct: 155 tctttgattggactgaagggagctccctc 183
>47656_ath-miRf10556-akr:pmrd
Length = 203
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 184 tctttgcttggactgaagggtgctccctc 212
|||||| ||||||||||||| ||||||||
Sbjct: 44 tctttgattggactgaagggagctccctc 16
>46992_ath-miR319a:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 tctttgcttggactgaagggtgctccctc 212
|||||| ||||||||||||| ||||||||
Sbjct: 147 tctttgattggactgaagggagctccctc 175
>46856_ahi-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 tctttgcttggactgaagggtgctccctc 212
|||||| ||||||||||||| ||||||||
Sbjct: 154 tctttgattggactgaagggagctccctc 182
>46855_aha-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 tctttgcttggactgaagggtgctccctc 212
|||||| ||||||||||||| ||||||||
Sbjct: 154 tctttgattggactgaagggagctccctc 182
>46846_acb-miR159:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 184 tctttgcttggactgaagggtgctccctc 212
|||||| ||||||||||||| ||||||||
Sbjct: 153 tctttgattggactgaagggagctccctc 181
>52451_ptc-miRf10629-akr:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 76 attagctgccgactcattca 95
||||||||||||||||||||
Sbjct: 42 attagctgccgactcattca 61
>51710_ptc-miR319d:pmrd
Length = 193
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 76 attagctgccgactcattca 95
||||||||||||||||||||
Sbjct: 54 attagctgccgactcattca 73
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 188 tgcttggactgaagggtgctccct 211
|||||||||||||||| |||||||
Sbjct: 162 tgcttggactgaagggagctccct 185
>51709_ptc-miR319c:pmrd
Length = 196
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 76 attagctgccgactcattca 95
||||||||||||||||||||
Sbjct: 54 attagctgccgactcattca 73
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 188 tgcttggactgaagggtgctccct 211
|||||||||||||||| |||||||
Sbjct: 165 tgcttggactgaagggagctccct 188
>48478_ech-miR159:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 8e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 184 tctttgcttggactgaagggtgctccct 211
|||||| ||||||||||||| |||||||
Sbjct: 154 tctttgattggactgaagggagctccct 181
>48429_crb-miR159:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 8e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 184 tctttgcttggactgaagggtgctccct 211
|||||| ||||||||||||| |||||||
Sbjct: 156 tctttgattggactgaagggagctccct 183
>46993_ath-miR319b:pmrd
Length = 172
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 188 tgcttggactgaagggtgctccct 211
|||||||||||||||| |||||||
Sbjct: 149 tgcttggactgaagggagctccct 172
