miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001681.1/23904-24102 4558:Sorghum bicolor
           (sorghum)
          Length = 199

 Score =  394 bits (199), Expect = e-109
 Identities = 199/199 (100%)
 Strand = Plus / Plus

                                                                       
Query: 24  ccggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctg 83
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ccggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctg 60

                                                                       
Query: 84  ccgactcattcacccacatgccaagcaaacggccatggaaacgagctagctttgcagatg 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ccgactcattcacccacatgccaagcaaacggccatggaaacgagctagctttgcagatg 120

                                                                       
Query: 144 agtgaatgaagcgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaaggg 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agtgaatgaagcgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaaggg 180

                              
Query: 204 tgctccctcctcccctcct 222
           |||||||||||||||||||
Sbjct: 181 tgctccctcctcccctcct 199




>RF00638;MIR159;EU946960.1/247-441 4577:Zea mays
          Length = 195

 Score =  325 bits (164), Expect = 2e-88
 Identities = 183/189 (96%), Gaps = 4/189 (2%)
 Strand = Plus / Plus

                                                                       
Query: 29  tggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgac 88
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6   tggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgac 65

                                                                       
Query: 89  tcattcacccacatgccaagcaaacggccatggaaacgagctagctttgcagatgagtga 148
           ||||||||||||||||||||||||||||||||||||    | ||||||||||||||||||
Sbjct: 66  tcattcacccacatgccaagcaaacggccatggaaa----ccagctttgcagatgagtga 121

                                                                       
Query: 149 atgaagcgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaagggtgctc 208
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 122 atgaagcgggaggtaaaagcttcgatctcgcaccgtctttgcttggactgaagggtgctc 181

                    
Query: 209 cctcctccc 217
           |||||||||
Sbjct: 182 cctcctccc 190




>RF00638;MIR159;AACV01000479.1/66279-66476 39947:Oryza sativa
           Japonica Group
          Length = 198

 Score =  198 bits (100), Expect = 3e-50
 Identities = 172/192 (89%), Gaps = 3/192 (1%)
 Strand = Plus / Plus

                                                                       
Query: 26  ggatggaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgcc 85
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3   ggatggaagagagcgtccttcagtccactcatgggcggtgctagggtcgaattagctgcc 62

                                                                       
Query: 86  gactcattcacccacatgccaagcaaacggccatggaaacgagc-tagctttgcagatga 144
           ||||||||||||||||||||||||||    |  | || |  |||  ||||| ||||||||
Sbjct: 63  gactcattcacccacatgccaagcaagaaacgcttgaga-tagcgaagcttagcagatga 121

                                                                       
Query: 145 gtgaatgaagcgggaggtaaaagcttcgatctcgcaccatctttgcttggactgaagggt 204
           |||||||||||||||||| || | | ||||||||| || |||||||||||||||||||||
Sbjct: 122 gtgaatgaagcgggaggt-aacgttccgatctcgcgccgtctttgcttggactgaagggt 180

                       
Query: 205 gctccctcctcc 216
           ||||||||||||
Sbjct: 181 gctccctcctcc 192




>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
          Length = 184

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                      
Query: 32 aagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactca 91
          |||||||| | |||||||||||||| ||| |||  |||| |  |||||||||||||||||
Sbjct: 8  aagagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactca 67

              
Query: 92 ttca 95
          ||||
Sbjct: 68 ttca 71




>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
          (castor bean)
          Length = 223

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                      
Query: 32 aagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactca 91
          |||||||| | |||||||||||||| ||| || | |||| |  |||||||||||||||||
Sbjct: 9  aagagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactca 68

              
Query: 92 ttca 95
          ||||
Sbjct: 69 ttca 72




>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
           (barrel medic)
          Length = 191

 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 184 tctttgcttggactgaagggtgctccct 211
           |||||||||||||||||||| |||||||
Sbjct: 153 tctttgcttggactgaagggagctccct 180



 Score = 44.1 bits (22), Expect = 0.001
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 31 gaagagagcgtccttcagtccactca 56
          ||||||||| ||||||||||||||||
Sbjct: 8  gaagagagcttccttcagtccactca 33




>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
           (barrel medic)
          Length = 198

 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 184 tctttgcttggactgaagggtgctccct 211
           |||||||||||||||||||| |||||||
Sbjct: 160 tctttgcttggactgaagggagctccct 187




>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
          Length = 183

 Score = 48.1 bits (24), Expect = 6e-05
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                      
Query: 31 gaagagagcgtccttcagtccactcaggggcggtgctagggtcgaattagctgccgactc 90
          ||||||||| | |||||||||||||| ||| ||   |||| | |||||||||||||||||
Sbjct: 8  gaagagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactc 67




>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus
          trichocarpa
          Length = 204

 Score = 46.1 bits (23), Expect = 2e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 69 gggtcgaattagctgccgactcattca 95
          |||| ||||||||||||||||||||||
Sbjct: 48 gggttgaattagctgccgactcattca 74




>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
          Length = 178

 Score = 44.1 bits (22), Expect = 0.001
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 75  aattagctgccgactcattcacccacatgc 104
           ||||||||||||||||||||| ||| ||||
Sbjct: 52  aattagctgccgactcattcatccaaatgc 81