miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01002190.1/69225-69027 4558:Sorghum bicolor
(sorghum)
Length = 199
Score = 355 bits (179), Expect = 1e-97
Identities = 179/179 (100%)
Strand = Plus / Plus
Query: 1 gagagctctcttcagtccactctaaaatggctgtagagtttcattagctgccgactcatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gagagctctcttcagtccactctaaaatggctgtagagtttcattagctgccgactcatc 70
Query: 61 cattcacctaccaagaaccatggacaagcgataggtttggtcttggtagccgagtgggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 cattcacctaccaagaaccatggacaagcgataggtttggtcttggtagccgagtgggtg 130
Query: 121 gcgcgggagctaaaatcaagctctacgctgtttatggttggactgaagggtgctccctt 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gcgcgggagctaaaatcaagctctacgctgtttatggttggactgaagggtgctccctt 189
>RF00638;MIR159;AACV01002034.1/2269-2077 39947:Oryza sativa Japonica
Group
Length = 193
Score = 119 bits (60), Expect = 1e-26
Identities = 149/179 (83%), Gaps = 6/179 (3%)
Strand = Plus / Plus
Query: 1 gagagctctcttcagtccactctaaaatggctgtagagtttcattagctgccgactcatc 60
||||||||||||||||||||||| | |||||||||| |||| |||||||||||| |||||
Sbjct: 11 gagagctctcttcagtccactctcagatggctgtagggttttattagctgccgaatcatc 70
Query: 61 cattcacctaccaagaaccatggacaagcgataggtttggtcttggtagccgagtgggtg 120
||||||||||||||||| || | || | | |||||||||| || ||| ||
Sbjct: 71 cattcacctaccaagaaagttgcaggagtg------tatctcttggtagcggactggatg 124
Query: 121 gcgcgggagctaaaatcaagctctacgctgtttatggttggactgaagggtgctccctt 179
||||||||||||||| |||||| ||| |||| |||||||||||||||||||||||||
Sbjct: 125 acgcgggagctaaaatttagctctgcgccgtttgtggttggactgaagggtgctccctt 183
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gagagctctcttcagtccactc 22
||||||||||||||||||||||
Sbjct: 11 gagagctctcttcagtccactc 32
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gagagctctcttcagtccactc 22
||||||||||||||||||||||
Sbjct: 11 gagagctctcttcagtccactc 32
