miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>42784_zma-MIR390a:mirbase
Length = 181
Score = 89.7 bits (45), Expect = 7e-19
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 135 tggttctgtctatcaatctgaagcgctatctatcctgagctccac 179
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tggttctgtctatcaatctgaagcgctatctatcctgagctccac 181
Score = 81.8 bits (41), Expect = 2e-16
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 2 gaagctcaggagggatagcgcctaggaaaacacatagattggagc 46
||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1 gaagctcaggagggatagcgcctaggaaaacacatagatcggagc 45
>42785_zma-MIR390b:mirbase
Length = 192
Score = 71.9 bits (36), Expect = 2e-13
Identities = 45/47 (95%), Gaps = 2/47 (4%)
Strand = Plus / Plus
Query: 2 gaagctcaggagggatagcgcctaggaaa--acacatagattggagc 46
||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 gaagctcaggagggatagcgcctaggaaatcacacatagattggagc 47
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 154 gaagcgctatctatcctgagctccac 179
||||||||||||||||||||||||||
Sbjct: 167 gaagcgctatctatcctgagctccac 192
>41773_bdi-MIR390b:mirbase
Length = 186
Score = 54.0 bits (27), Expect = 4e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tgaagctcaggagggatagcgcctagg 27
|||||||||||||||||||||||||||
Sbjct: 17 tgaagctcaggagggatagcgcctagg 43
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 154 gaagcgctatctatcctgagctccac 179
||||||||||||||||||||||||||
Sbjct: 143 gaagcgctatctatcctgagctccac 168
>41772_bdi-MIR390:mirbase
Length = 209
Score = 54.0 bits (27), Expect = 4e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tgaagctcaggagggatagcgcctagg 27
|||||||||||||||||||||||||||
Sbjct: 29 tgaagctcaggagggatagcgcctagg 55
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 154 gaagcgctatctatcctgagctccac 179
||||||||||||||||||||||||||
Sbjct: 155 gaagcgctatctatcctgagctccac 180
>41996_osa-MIR390:mirbase
Length = 91
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tgaagctcaggagggatagcgcct 24
||||||||||||||||||||||||
Sbjct: 17 tgaagctcaggagggatagcgcct 40
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 gcgctatctatcctgagctcca 178
||||||||||||||||||||||
Sbjct: 55 gcgctatctatcctgagctcca 76
>39486_ppt-MIR390b:mirbase
Length = 175
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 gaagctcaggagggatagcgcc 23
||||||||||||||||||||||
Sbjct: 27 gaagctcaggagggatagcgcc 48
>39485_ppt-MIR390a:mirbase
Length = 137
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2 gaagctcaggagggatagcgcc 23
||||||||||||||||||||||
Sbjct: 15 gaagctcaggagggatagcgcc 36
>41640_vvi-MIR390:mirbase
Length = 140
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>41416_ptc-MIR390d:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>41415_ptc-MIR390c:mirbase
Length = 123
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>41414_ptc-MIR390b:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>41413_ptc-MIR390a:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>41237_csi-MIR390:mirbase
Length = 154
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 21 aagctcaggagggatagcgcc 41
>41131_tcc-MIR390b:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 21 aagctcaggagggatagcgcc 41
>41130_tcc-MIR390a:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 21 aagctcaggagggatagcgcc 41
>41053_ghr-MIR390c:mirbase
Length = 114
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>41052_ghr-MIR390b:mirbase
Length = 132
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgcc 38
>41051_ghr-MIR390a:mirbase
Length = 124
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgcc 35
>40705_mtr-MIR390:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgcc 26
>40468_gma-MIR390a:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>40467_gma-MIR390a:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
>40372_rco-MIR390b:mirbase
Length = 122
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgcc 26
>40371_rco-MIR390a:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 6 aagctcaggagggatagcgcc 26
>40294_bna-MIR390c:mirbase
Length = 128
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 23 aagctcaggagggatagcgcc 43
>40293_bna-MIR390b:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgcc 38
>40292_bna-MIR390a:mirbase
Length = 144
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 33 aagctcaggagggatagcgcc 53
>40073_ath-MIR390b:mirbase
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgcc 35
>40072_ath-MIR390a:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgcc 38
>39863_aly-MIR390b:mirbase
Length = 127
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>39862_aly-MIR390a:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 3 aagctcaggagggatagcgcc 23
|||||||||||||||||||||
Sbjct: 29 aagctcaggagggatagcgcc 49
>39487_ppt-MIR390c:mirbase
Length = 135
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 4 agctcaggagggatagcgcc 23
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
