miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;ABXC01004449.1/9463-9548 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 11 gtgtccctaggagttctctgcaagcacttcacgaggcatcgttttgagagcttttgtgaa 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtccctaggagttctctgcaagcacttcacgaggcatcgttttgagagcttttgtgaa 60
Query: 71 gtgtttgggggaactcttagtgtcac 96
||||||||||||||||||||||||||
Sbjct: 61 gtgtttgggggaactcttagtgtcac 86
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 91.7 bits (46), Expect = 2e-18
Identities = 71/78 (91%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 11 gtgtccctaggagttctctgcaagcacttcacgaggcatcgttttgagagcttttgtgaa 70
||||||| ||||||||||||||| |||||||| | ||| | |||| ||||||||||||||
Sbjct: 1 gtgtccccaggagttctctgcaaacacttcacaaagca-cttttttagagcttttgtgaa 59
Query: 71 gtgtttgggggaactctt 88
||||||||||||||||||
Sbjct: 60 gtgtttgggggaactctt 77
>RF00451;mir-395;ABXC01004449.1/9137-9221 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 81.8 bits (41), Expect = 2e-15
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 11 gtgtccctaggagttctctgcaagcacttcacgaggcatcgttttgagagcttttgtgaa 70
||||||| |||||||||| |||||||||||||| ||| |||||||||||||||||||
Sbjct: 1 gtgtccccgggagttctctacaagcacttcacgatgcactattttgagagcttttgtgaa 60
Query: 71 gtgtttgggggaactct 87
||| |||||||||||||
Sbjct: 61 gtg-ttgggggaactct 76
>RF00451;mir-395;ABXC01004440.1/121171-121082 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 81.8 bits (41), Expect = 2e-15
Identities = 71/79 (89%), Gaps = 4/79 (5%)
Strand = Plus / Plus
Query: 22 agttctctgcaagcacttcacgaggcatcg---ttttgagagc-ttttgtgaagtgtttg 77
||||||||||||||||||||| |||||||| || ||||||| ||||||||||||||||
Sbjct: 12 agttctctgcaagcacttcacaaggcatcgtcattgtgagagctttttgtgaagtgtttg 71
Query: 78 ggggaactcttagtgtcac 96
|||||||| || |||||||
Sbjct: 72 ggggaacttttggtgtcac 90
>RF00451;mir-395;AAAA02014816.1/37188-37273 39946:Oryza sativa
Indica Group
Length = 86
Score = 67.9 bits (34), Expect = 2e-11
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 13 gtccctaggagttctctgcaagcacttcacgaggcatcgttttgagagcttttgtgaagt 72
|||||||||||||| | ||||||||| |||| || || ||||||| | | |||||||
Sbjct: 3 gtccctaggagttcctttcaagcactttacgacacactgtattgagagttgtcgtgaagt 62
Query: 73 gtttgggggaactcttagtgtc 94
||||||||||||||||||||||
Sbjct: 63 gtttgggggaactcttagtgtc 84
>RF00451;mir-395;AAAA02014891.1/20403-20488 39946:Oryza sativa
Indica Group
Length = 86
Score = 65.9 bits (33), Expect = 1e-10
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 19 aggagttctctgcaagcacttcacgaggcatcgttttgagagcttttgtgaagtgtttgg 78
|||||||| || |||||||||||||| ||| ||| ||||| | |||||||||||||||
Sbjct: 9 aggagttcccttcaagcacttcacgacgcactatttagagagttgttgtgaagtgtttgg 68
Query: 79 gggaactct 87
|||||||||
Sbjct: 69 gggaactct 77
>RF00451;mir-395;ABXC01004449.1/9310-9395 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 60.0 bits (30), Expect = 6e-09
Identities = 68/78 (87%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 11 gtgtccctaggagttctctgcaagcacttcacgagg-catcgttttgagagcttttgtga 69
||||||||||||||||| ||||| |||||||| | ||| |||| |||||||||||||
Sbjct: 1 gtgtccctaggagttctttgcaaacacttcacaaaaacatt-ttttaagagcttttgtga 59
Query: 70 agtgtttgggggaactct 87
||||| ||||||||||||
Sbjct: 60 agtgtatgggggaactct 77
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 60.0 bits (30), Expect = 6e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 59 agcttttgtgaagtgtttgggggaactctt 88
||||||||||||||||||||||||||||||
Sbjct: 77 agcttttgtgaagtgtttgggggaactctt 106
>RF00451;mir-395;ABXC01004440.1/121011-120921 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 tttgtgaagtgtttgggggaactctt 88
||||||||||||||||||||||||||
Sbjct: 58 tttgtgaagtgtttgggggaactctt 83
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactcttagtgtca 95
|||||||||||||||||||||| ||||||
Sbjct: 50 tgaagtgtttgggggaactcttggtgtca 78
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactcttagtgtca 95
|||||||||||||||||||||| ||||||
Sbjct: 57 tgaagtgtttgggggaactcttggtgtca 85
>RF00451;mir-395;AP008214.1/3293470-3293581 39947:Oryza sativa
Japonica Group
Length = 112
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 59 agcttttgtgaagtgtttgggggaactct 87
|||| ||||||||||||||||||||||||
Sbjct: 75 agctattgtgaagtgtttgggggaactct 103
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 tgtgaagtgtttgggggaactctt 88
||||||||||||||||||||||||
Sbjct: 72 tgtgaagtgtttgggggaactctt 95
>RF00451;mir-395;AF402959.1/7123-7037 4530:Oryza sativa (rice)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 tgtgaagtgtttgggggaactctt 88
||||||||||||||||||||||||
Sbjct: 56 tgtgaagtgtttgggggaactctt 79
>RF00451;mir-395;AP008214.1/3292975-3293073 39947:Oryza sativa
Japonica Group
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 tgtgaagtgtttgggggaactctt 88
||||||||||||||||||||||||
Sbjct: 68 tgtgaagtgtttgggggaactctt 91
>RF00451;mir-395;ABXC01004559.1/90896-91004 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 tgtgaagtgtttgggggaactct 87
|||||||||||||||||||||||
Sbjct: 78 tgtgaagtgtttgggggaactct 100
>RF00451;mir-395;AP008214.1/3293135-3293246 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 tgtgaagtgtttgggggaactct 87
|||||||||||||||||||||||
Sbjct: 81 tgtgaagtgtttgggggaactct 103
>RF00451;mir-395;AP008210.1/31838919-31838832 39947:Oryza sativa
Japonica Group
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 tgtgaagtgtttgggggaactct 87
|||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactct 79
>RF00451;mir-395;AACV01010557.1/49631-49718 39947:Oryza sativa
Japonica Group
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 tgtgaagtgtttgggggaactct 87
|||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactct 79
>RF00451;mir-395;AAAA02014816.1/37465-37552 39946:Oryza sativa
Indica Group
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 tgtgaagtgtttgggggaactct 87
|||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactct 79
>RF00451;mir-395;AACV01019418.1/13768-13856 39947:Oryza sativa
Japonica Group
Length = 89
Score = 46.1 bits (23), Expect = 9e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 52 ttttgagagcttttgtgaagtgtttgggggaactcttagtgtc 94
||||||||| | |||||||| ||||||||||| ||| ||||||
Sbjct: 45 ttttgagagttgttgtgaagcgtttgggggaaatctcagtgtc 87
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactctt 88
||||||||||||||||||||||
Sbjct: 50 tgaagtgtttgggggaactctt 71
>RF00451;mir-395;AASG02002767.1/24567-24665 3988:Ricinus communis
(castor bean)
Length = 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactcttagtgtcac 96
|||||||||||||||||||| | |||||||
Sbjct: 70 tgaagtgtttgggggaactcctggtgtcac 99
>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactctt 88
||||||||||||||||||||||
Sbjct: 91 tgaagtgtttgggggaactctt 112
>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactctt 88
||||||||||||||||||||||
Sbjct: 86 tgaagtgtttgggggaactctt 107
>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactctt 88
||||||||||||||||||||||
Sbjct: 92 tgaagtgtttgggggaactctt 113
>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactctt 88
||||||||||||||||||||||
Sbjct: 87 tgaagtgtttgggggaactctt 108
>RF00451;mir-395;AC149601.3/39285-39203 3880:Medicago truncatula
(barrel medic)
Length = 83
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactctt 88
||||||||||||||||||||||
Sbjct: 54 tgaagtgtttgggggaactctt 75
>RF00451;mir-395;AC146854.19/48268-48370 3880:Medicago truncatula
(barrel medic)
Length = 103
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactctt 88
||||||||||||||||||||||
Sbjct: 74 tgaagtgtttgggggaactctt 95
>RF00451;mir-395;AC149601.3/73603-73508 3880:Medicago truncatula
(barrel medic)
Length = 96
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactctt 88
||||||||||||||||||||||
Sbjct: 67 tgaagtgtttgggggaactctt 88
>RF00451;mir-395;AC194694.1/86216-86306 4081:Solanum lycopersicum
Length = 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactctt 88
||||||||||||||||||||||
Sbjct: 62 tgaagtgtttgggggaactctt 83
>RF00451;mir-395;ABXC01004449.1/8869-8999 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gtgaagtgtttgggggaactct 87
||||||||||||||||||||||
Sbjct: 101 gtgaagtgtttgggggaactct 122
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 tgaagtgtttgggggaactctt 88
||||||||||||||||||||||
Sbjct: 74 tgaagtgtttgggggaactctt 95
>RF00451;mir-395;ABXC01004559.1/90713-90831 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gtgaagtgtttgggggaactct 87
||||||||||||||||||||||
Sbjct: 89 gtgaagtgtttgggggaactct 110
>RF00451;mir-395;AP008214.1/3292800-3292911 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 gtgaagtgtttgggggaactct 87
||||||||||||||||||||||
Sbjct: 82 gtgaagtgtttgggggaactct 103
