miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;ABXC01004440.1/121011-120921 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 145 bits (73), Expect = 8e-35
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 gagttccctacaagcacttcacgagaccttggcttaataaagggttgtttgtgaagtgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gagttccctacaagcacttcacgagaccttggcttaataaagggttgtttgtgaagtgtt 70
Query: 61 tgggggaactctt 73
|||||||||||||
Sbjct: 71 tgggggaactctt 83
>RF00451;mir-395;ABXC01004449.1/9463-9548 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 tttgtgaagtgtttgggggaactctt 73
||||||||||||||||||||||||||
Sbjct: 53 tttgtgaagtgtttgggggaactctt 78
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 tttgtgaagtgtttgggggaactctt 73
||||||||||||||||||||||||||
Sbjct: 52 tttgtgaagtgtttgggggaactctt 77
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 tttgtgaagtgtttgggggaactctt 73
||||||||||||||||||||||||||
Sbjct: 81 tttgtgaagtgtttgggggaactctt 106
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tgtgaagtgtttgggggaactctt 73
||||||||||||||||||||||||
Sbjct: 72 tgtgaagtgtttgggggaactctt 95
>RF00451;mir-395;AF402959.1/7123-7037 4530:Oryza sativa (rice)
Length = 87
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tgtgaagtgtttgggggaactctt 73
||||||||||||||||||||||||
Sbjct: 56 tgtgaagtgtttgggggaactctt 79
>RF00451;mir-395;AP008214.1/3292975-3293073 39947:Oryza sativa
Japonica Group
Length = 99
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tgtgaagtgtttgggggaactctt 73
||||||||||||||||||||||||
Sbjct: 68 tgtgaagtgtttgggggaactctt 91
>RF00451;mir-395;AAAA02014891.1/20403-20488 39946:Oryza sativa
Indica Group
Length = 86
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 ttgtgaagtgtttgggggaactct 72
||||||||||||||||||||||||
Sbjct: 54 ttgtgaagtgtttgggggaactct 77
>RF00451;mir-395;AP008214.1/3293470-3293581 39947:Oryza sativa
Japonica Group
Length = 112
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 ttgtgaagtgtttgggggaactct 72
||||||||||||||||||||||||
Sbjct: 80 ttgtgaagtgtttgggggaactct 103
>RF00451;mir-395;ABXC01004559.1/90896-91004 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 tgtgaagtgtttgggggaactct 72
|||||||||||||||||||||||
Sbjct: 78 tgtgaagtgtttgggggaactct 100
>RF00451;mir-395;ABXC01004440.1/121171-121082 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 tttgtgaagtgtttgggggaact 70
|||||||||||||||||||||||
Sbjct: 57 tttgtgaagtgtttgggggaact 79
>RF00451;mir-395;AP008214.1/3293135-3293246 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 tgtgaagtgtttgggggaactct 72
|||||||||||||||||||||||
Sbjct: 81 tgtgaagtgtttgggggaactct 103
>RF00451;mir-395;AP008210.1/31838919-31838832 39947:Oryza sativa
Japonica Group
Length = 88
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 tgtgaagtgtttgggggaactct 72
|||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactct 79
>RF00451;mir-395;AACV01010557.1/49631-49718 39947:Oryza sativa
Japonica Group
Length = 88
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 tgtgaagtgtttgggggaactct 72
|||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactct 79
>RF00451;mir-395;AAAA02014816.1/37465-37552 39946:Oryza sativa
Indica Group
Length = 88
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 tgtgaagtgtttgggggaactct 72
|||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactct 79
>RF00451;mir-395;AAAA02014816.1/37188-37273 39946:Oryza sativa
Indica Group
Length = 86
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 gtgaagtgtttgggggaactctt 73
|||||||||||||||||||||||
Sbjct: 56 gtgaagtgtttgggggaactctt 78
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tgaagtgtttgggggaactctt 73
||||||||||||||||||||||
Sbjct: 50 tgaagtgtttgggggaactctt 71
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tgaagtgtttgggggaactctt 73
||||||||||||||||||||||
Sbjct: 50 tgaagtgtttgggggaactctt 71
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tgaagtgtttgggggaactctt 73
||||||||||||||||||||||
Sbjct: 57 tgaagtgtttgggggaactctt 78
>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tgaagtgtttgggggaactctt 73
||||||||||||||||||||||
Sbjct: 91 tgaagtgtttgggggaactctt 112
>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tgaagtgtttgggggaactctt 73
||||||||||||||||||||||
Sbjct: 86 tgaagtgtttgggggaactctt 107
>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tgaagtgtttgggggaactctt 73
||||||||||||||||||||||
Sbjct: 92 tgaagtgtttgggggaactctt 113
>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tgaagtgtttgggggaactctt 73
||||||||||||||||||||||
Sbjct: 87 tgaagtgtttgggggaactctt 108
>RF00451;mir-395;AC149601.3/39285-39203 3880:Medicago truncatula
(barrel medic)
Length = 83
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tgaagtgtttgggggaactctt 73
||||||||||||||||||||||
Sbjct: 54 tgaagtgtttgggggaactctt 75
>RF00451;mir-395;AC146854.19/48268-48370 3880:Medicago truncatula
(barrel medic)
Length = 103
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tgaagtgtttgggggaactctt 73
||||||||||||||||||||||
Sbjct: 74 tgaagtgtttgggggaactctt 95
>RF00451;mir-395;AC149601.3/73603-73508 3880:Medicago truncatula
(barrel medic)
Length = 96
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tgaagtgtttgggggaactctt 73
||||||||||||||||||||||
Sbjct: 67 tgaagtgtttgggggaactctt 88
>RF00451;mir-395;AC194694.1/86216-86306 4081:Solanum lycopersicum
Length = 91
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tgaagtgtttgggggaactctt 73
||||||||||||||||||||||
Sbjct: 62 tgaagtgtttgggggaactctt 83
>RF00451;mir-395;ABXC01004449.1/8869-8999 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 gtgaagtgtttgggggaactct 72
||||||||||||||||||||||
Sbjct: 101 gtgaagtgtttgggggaactct 122
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tgaagtgtttgggggaactctt 73
||||||||||||||||||||||
Sbjct: 74 tgaagtgtttgggggaactctt 95
>RF00451;mir-395;ABXC01004559.1/90713-90831 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 gtgaagtgtttgggggaactct 72
||||||||||||||||||||||
Sbjct: 89 gtgaagtgtttgggggaactct 110
>RF00451;mir-395;AP008214.1/3292800-3292911 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 gtgaagtgtttgggggaactct 72
||||||||||||||||||||||
Sbjct: 82 gtgaagtgtttgggggaactct 103
>RF00451;mir-395;ABIM01022224.1/3975-3886 3649:Carica papaya
(papaya)
Length = 90
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 tgaagtgtttgggggaactct 72
|||||||||||||||||||||
Sbjct: 61 tgaagtgtttgggggaactct 81
>RF00451;mir-395;ABIM01022223.1/1552-1464 3649:Carica papaya
(papaya)
Length = 89
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 tgaagtgtttgggggaactct 72
|||||||||||||||||||||
Sbjct: 61 tgaagtgtttgggggaactct 81
>RF00451;mir-395;AARH01006980.1/2290-2177 3694:Populus trichocarpa
Length = 114
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 tgaagtgtttgggggaactct 72
|||||||||||||||||||||
Sbjct: 85 tgaagtgtttgggggaactct 105
>RF00451;mir-395;AASG02002767.1/10540-10432 3988:Ricinus communis
(castor bean)
Length = 109
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 tgaagtgtttgggggaactct 72
|||||||||||||||||||||
Sbjct: 80 tgaagtgtttgggggaactct 100
>RF00451;mir-395;ABXC01004449.1/9310-9395 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 48 tttgtgaagtgtttgggggaactct 72
|||||||||||| ||||||||||||
Sbjct: 53 tttgtgaagtgtatgggggaactct 77
>RF00451;mir-395;ABXC01004559.1/91372-91477 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 49 ttgtgaagtgtttgggggaactctt 73
|||||||||| ||||||||||||||
Sbjct: 74 ttgtgaagtgcttgggggaactctt 98
>RF00451;mir-395;AP008210.1/32655890-32656029 39947:Oryza sativa
Japonica Group
Length = 140
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 51 gtgaagtgtttgggggaactc 71
|||||||||||||||||||||
Sbjct: 110 gtgaagtgtttgggggaactc 130
