miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 168 bits (85), Expect = 9e-42
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 10 gtgtccccaggagttctctgcaaacacttcacaaagcacttttttagagcttttgtgaag 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgtccccaggagttctctgcaaacacttcacaaagcacttttttagagcttttgtgaag 60
Query: 70 tgtttgggggaactcttggtgccac 94
|||||||||||||||||||||||||
Sbjct: 61 tgtttgggggaactcttggtgccac 85
>RF00451;mir-395;ABXC01004449.1/9310-9395 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 93.7 bits (47), Expect = 4e-19
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 10 gtgtccccaggagttctctgcaaacacttcacaaag-cacttttttagagcttttgtgaa 68
||||||| ||||||||| ||||||||||||||||| || ||||| ||||||||||||||
Sbjct: 1 gtgtccctaggagttctttgcaaacacttcacaaaaacattttttaagagcttttgtgaa 60
Query: 69 gtgtttgggggaactcttggtgc 91
|||| |||||||||||| |||||
Sbjct: 61 gtgtatgggggaactctcggtgc 83
>RF00451;mir-395;ABXC01004449.1/9463-9548 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 91.7 bits (46), Expect = 2e-18
Identities = 71/78 (91%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 10 gtgtccccaggagttctctgcaaacacttcacaaagca-cttttttagagcttttgtgaa 68
||||||| ||||||||||||||| |||||||| | ||| | |||| ||||||||||||||
Sbjct: 1 gtgtccctaggagttctctgcaagcacttcacgaggcatcgttttgagagcttttgtgaa 60
Query: 69 gtgtttgggggaactctt 86
||||||||||||||||||
Sbjct: 61 gtgtttgggggaactctt 78
>RF00451;mir-395;ABXC01004449.1/9137-9221 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 75.8 bits (38), Expect = 1e-13
Identities = 76/86 (88%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 10 gtgtccccaggagttctctgcaaacacttcacaaagcactttttt-agagcttttgtgaa 68
|||||||| |||||||||| ||| |||||||| | ||||| |||| ||||||||||||||
Sbjct: 1 gtgtccccgggagttctctacaagcacttcacgatgcactattttgagagcttttgtgaa 60
Query: 69 gtgtttgggggaactcttggtgccac 94
||| ||||||||||||| | ||||||
Sbjct: 61 gtg-ttgggggaactctcgatgccac 85
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 73.8 bits (37), Expect = 4e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 57 agcttttgtgaagtgtttgggggaactcttggtgcca 93
|||||||||||||||||||||||||||||||||||||
Sbjct: 77 agcttttgtgaagtgtttgggggaactcttggtgcca 113
>RF00451;mir-395;AAAA02014891.1/20403-20488 39946:Oryza sativa
Indica Group
Length = 86
Score = 60.0 bits (30), Expect = 6e-09
Identities = 67/78 (85%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 14 ccccaggagttctctgcaaacacttcacaaagcactttttt-agagcttttgtgaagtgt 72
|||||||||||| || ||| |||||||| | ||||| ||| |||| | |||||||||||
Sbjct: 5 ccccaggagttcccttcaagcacttcacgacgcactatttagagagttgttgtgaagtgt 64
Query: 73 ttgggggaactcttggtg 90
||||||||||||| ||||
Sbjct: 65 ttgggggaactctcggtg 82
>RF00451;mir-395;ABXC01004440.1/121011-120921 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 61 tttgtgaagtgtttgggggaactcttggt 89
|||||||||||||||||||||||||||||
Sbjct: 58 tttgtgaagtgtttgggggaactcttggt 86
>RF00451;mir-395;ABXC01004440.1/121171-121082 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 73/86 (84%), Gaps = 5/86 (5%)
Strand = Plus / Plus
Query: 10 gtgtccccaggagttctctgcaaacacttcacaaagca----cttttttagagctttt-g 64
||||||||| |||||||||||| |||||||||| ||| | || | ||||||||| |
Sbjct: 1 gtgtccccaaaagttctctgcaagcacttcacaaggcatcgtcattgtgagagctttttg 60
Query: 65 tgaagtgtttgggggaactcttggtg 90
||||||||||||||||||| ||||||
Sbjct: 61 tgaagtgtttgggggaacttttggtg 86
>RF00451;mir-395;AP008214.1/3293470-3293581 39947:Oryza sativa
Japonica Group
Length = 112
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 57 agcttttgtgaagtgtttgggggaactcttggtgcca 93
|||| |||||||||||||||||||||||| |||||||
Sbjct: 75 agctattgtgaagtgtttgggggaactctcggtgcca 111
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 63 tgtgaagtgtttgggggaactcttggtg 90
||||||||||||||||||||||||||||
Sbjct: 72 tgtgaagtgtttgggggaactcttggtg 99
>RF00451;mir-395;AP008214.1/3292975-3293073 39947:Oryza sativa
Japonica Group
Length = 99
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 63 tgtgaagtgtttgggggaactcttggt 89
|||||||||||||||||||||||||||
Sbjct: 68 tgtgaagtgtttgggggaactcttggt 94
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttggtg 90
||||||||||||||||||||||||||
Sbjct: 50 tgaagtgtttgggggaactcttggtg 75
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttggtg 90
||||||||||||||||||||||||||
Sbjct: 57 tgaagtgtttgggggaactcttggtg 82
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttggtg 90
||||||||||||||||||||||||||
Sbjct: 74 tgaagtgtttgggggaactcttggtg 99
>RF00451;mir-395;AASG02002767.1/10540-10432 3988:Ricinus communis
(castor bean)
Length = 109
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttggtgcca 93
||||||||||||||||||||| |||||||
Sbjct: 80 tgaagtgtttgggggaactctaggtgcca 108
>RF00451;mir-395;AM473306.2/7052-6961 29760:Vitis vinifera
Length = 92
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttggtgcca 93
|||||||||||||||||||| ||||||||
Sbjct: 63 tgaagtgtttgggggaactcctggtgcca 91
>RF00451;mir-395;ABXC01004559.1/90713-90831 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 50.1 bits (25), Expect = 6e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 11 tgtccccaggagttctctgcaaacacttcacaa 43
||||||| ||||||| |||||||||||||||||
Sbjct: 2 tgtcccctggagttccctgcaaacacttcacaa 34
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gtgaagtgtttgggggaactcttggtg 90
|||||||||||||||||||||| ||||
Sbjct: 89 gtgaagtgtttgggggaactctaggtg 115
>RF00451;mir-395;AF402959.1/7123-7037 4530:Oryza sativa (rice)
Length = 87
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 63 tgtgaagtgtttgggggaactcttg 87
|||||||||||||||||||||||||
Sbjct: 56 tgtgaagtgtttgggggaactcttg 80
>RF00451;mir-395;AC149601.3/8344-8225 3880:Medicago truncatula
(barrel medic)
Length = 120
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttgg 88
||||||||||||||||||||||||
Sbjct: 91 tgaagtgtttgggggaactcttgg 114
>RF00451;mir-395;AC149601.3/18879-18765 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttgg 88
||||||||||||||||||||||||
Sbjct: 86 tgaagtgtttgggggaactcttgg 109
>RF00451;mir-395;AC146854.19/12911-13031 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttgg 88
||||||||||||||||||||||||
Sbjct: 92 tgaagtgtttgggggaactcttgg 115
>RF00451;mir-395;AC149601.3/13054-12939 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttgg 88
||||||||||||||||||||||||
Sbjct: 87 tgaagtgtttgggggaactcttgg 110
>RF00451;mir-395;AC149601.3/39285-39203 3880:Medicago truncatula
(barrel medic)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttgg 88
||||||||||||||||||||||||
Sbjct: 54 tgaagtgtttgggggaactcttgg 77
>RF00451;mir-395;AC146854.19/48268-48370 3880:Medicago truncatula
(barrel medic)
Length = 103
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttgg 88
||||||||||||||||||||||||
Sbjct: 74 tgaagtgtttgggggaactcttgg 97
>RF00451;mir-395;AC149601.3/73603-73508 3880:Medicago truncatula
(barrel medic)
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttgg 88
||||||||||||||||||||||||
Sbjct: 67 tgaagtgtttgggggaactcttgg 90
>RF00451;mir-395;AC194694.1/86216-86306 4081:Solanum lycopersicum
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttgg 88
||||||||||||||||||||||||
Sbjct: 62 tgaagtgtttgggggaactcttgg 85
>RF00451;mir-395;ABXC01004559.1/90896-91004 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 tgtgaagtgtttgggggaactcttggtg 90
||||||||||||||||||||||| ||||
Sbjct: 78 tgtgaagtgtttgggggaactctaggtg 105
>RF00451;mir-395;AP008214.1/3293135-3293246 39947:Oryza sativa
Japonica Group
Length = 112
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 tgtgaagtgtttgggggaactcttggtg 90
||||||||||||||||||||||| ||||
Sbjct: 81 tgtgaagtgtttgggggaactctaggtg 108
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttg 87
|||||||||||||||||||||||
Sbjct: 50 tgaagtgtttgggggaactcttg 72
>RF00451;mir-395;CAAP02005254.1/14718-14811 29760:Vitis vinifera
Length = 94
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttggtgc 91
|||||||||||||||||||| ||||||
Sbjct: 65 tgaagtgtttgggggaactcctggtgc 91
>RF00451;mir-395;ABXC01004449.1/8869-8999 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gtgaagtgtttgggggaactcttggtg 90
|||||||||||||||||||||| ||||
Sbjct: 101 gtgaagtgtttgggggaactctgggtg 127
>RF00451;mir-395;ABXC01004559.1/91066-91167 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 63 tgtgaagtgtttgggggaactcttggtgcca 93
|||||||||||||| |||||||||| |||||
Sbjct: 71 tgtgaagtgtttggaggaactcttgttgcca 101
>RF00451;mir-395;AP008210.1/31838919-31838832 39947:Oryza sativa
Japonica Group
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tgtgaagtgtttgggggaactct 85
|||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactct 79
>RF00451;mir-395;AACV01010557.1/49631-49718 39947:Oryza sativa
Japonica Group
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tgtgaagtgtttgggggaactct 85
|||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactct 79
>RF00451;mir-395;AP008214.1/3292800-3292911 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 9e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gtgaagtgtttgggggaactcttggtg 90
|||||||||||||||||||||| ||||
Sbjct: 82 gtgaagtgtttgggggaactctaggtg 108
>RF00451;mir-395;AAAA02014816.1/37465-37552 39946:Oryza sativa
Indica Group
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 tgtgaagtgtttgggggaactct 85
|||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactct 79
>RF00451;mir-395;AAAA02014816.1/37188-37273 39946:Oryza sativa
Indica Group
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 64 gtgaagtgtttgggggaactctt 86
|||||||||||||||||||||||
Sbjct: 56 gtgaagtgtttgggggaactctt 78
>RF00451;mir-395;EU549474.1/234-333 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttggtg 90
||||||||||||||| ||||||||||
Sbjct: 71 tgaagtgtttggggggactcttggtg 96
>RF00451;mir-395;AARH01003032.1/301169-301270 3694:Populus
trichocarpa
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttggtg 90
|||||||||||||||||||| |||||
Sbjct: 73 tgaagtgtttgggggaactcctggtg 98
>RF00451;mir-395;AARH01006980.1/2290-2177 3694:Populus trichocarpa
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttggtg 90
||||||||||||||||||||| ||||
Sbjct: 85 tgaagtgtttgggggaactctgggtg 110
>RF00451;mir-395;AARH01006982.1/286-388 3694:Populus trichocarpa
Length = 103
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttggtg 90
|||||||||||||||||||| |||||
Sbjct: 74 tgaagtgtttgggggaactcctggtg 99
>RF00451;mir-395;AARH01003029.1/111607-111705 3694:Populus
trichocarpa
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttggtg 90
|||||||||||||||||||| |||||
Sbjct: 70 tgaagtgtttgggggaactcctggtg 95
>RF00451;mir-395;AASG02002767.1/24567-24665 3988:Ricinus communis
(castor bean)
Length = 99
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttggtg 90
|||||||||||||||||||| |||||
Sbjct: 70 tgaagtgtttgggggaactcctggtg 95
>RF00451;mir-395;AASG02002767.1/19144-19051 3988:Ricinus communis
(castor bean)
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttggtg 90
|||||||||||||||||||| |||||
Sbjct: 65 tgaagtgtttgggggaactcctggtg 90
>RF00451;mir-395;AC194694.1/82977-83070 4081:Solanum lycopersicum
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 67 aagtgtttgggggaactcttgg 88
||||||||||||||||||||||
Sbjct: 67 aagtgtttgggggaactcttgg 88
>RF00451;mir-395;AM452429.2/43298-43211 29760:Vitis vinifera
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttggtg 90
|||||||||||||||||||| |||||
Sbjct: 59 tgaagtgtttgggggaactcctggtg 84
>RF00451;mir-395;AM429340.2/1581-1494 29760:Vitis vinifera
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 65 tgaagtgtttgggggaactcttggtg 90
|||||||||||||||||||| |||||
Sbjct: 59 tgaagtgtttgggggaactcctggtg 84
>RF00451;mir-395;ABXC01004559.1/91372-91477 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 ttgtgaagtgtttgggggaactcttg 87
|||||||||| |||||||||||||||
Sbjct: 74 ttgtgaagtgcttgggggaactcttg 99
