miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;ABXC01004440.1/121011-120921 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 89.7 bits (45), Expect = 4e-18
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 gttccctaaaagcacttcacgagaccttggcttaataaaggg-cccttgtgaagtgtttg 59
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 13 gttccctacaagcacttcacgagaccttggcttaataaagggttgtttgtgaagtgtttg 72
Query: 60 ggggaactc 68
|||||||||
Sbjct: 73 ggggaactc 81
>RF00451;mir-395;ABXC01004449.1/9463-9548 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 ttgtgaagtgtttgggggaactc 68
|||||||||||||||||||||||
Sbjct: 54 ttgtgaagtgtttgggggaactc 76
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 ttgtgaagtgtttgggggaactc 68
|||||||||||||||||||||||
Sbjct: 53 ttgtgaagtgtttgggggaactc 75
>RF00451;mir-395;AAAA02014891.1/20403-20488 39946:Oryza sativa
Indica Group
Length = 86
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 ttgtgaagtgtttgggggaactc 68
|||||||||||||||||||||||
Sbjct: 54 ttgtgaagtgtttgggggaactc 76
>RF00451;mir-395;AP008214.1/3293470-3293581 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 ttgtgaagtgtttgggggaactc 68
|||||||||||||||||||||||
Sbjct: 80 ttgtgaagtgtttgggggaactc 102
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 ttgtgaagtgtttgggggaactc 68
|||||||||||||||||||||||
Sbjct: 82 ttgtgaagtgtttgggggaactc 104
>RF00451;mir-395;ABXC01004559.1/90896-91004 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 tgtgaagtgtttgggggaactc 68
||||||||||||||||||||||
Sbjct: 78 tgtgaagtgtttgggggaactc 99
>RF00451;mir-395;ABXC01004440.1/121171-121082 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 ttgtgaagtgtttgggggaact 67
||||||||||||||||||||||
Sbjct: 58 ttgtgaagtgtttgggggaact 79
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 tgtgaagtgtttgggggaactc 68
||||||||||||||||||||||
Sbjct: 72 tgtgaagtgtttgggggaactc 93
>RF00451;mir-395;AF402959.1/7123-7037 4530:Oryza sativa (rice)
Length = 87
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 tgtgaagtgtttgggggaactc 68
||||||||||||||||||||||
Sbjct: 56 tgtgaagtgtttgggggaactc 77
>RF00451;mir-395;AP008214.1/3293135-3293246 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 tgtgaagtgtttgggggaactc 68
||||||||||||||||||||||
Sbjct: 81 tgtgaagtgtttgggggaactc 102
>RF00451;mir-395;AP008210.1/31838919-31838832 39947:Oryza sativa
Japonica Group
Length = 88
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 tgtgaagtgtttgggggaactc 68
||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactc 78
>RF00451;mir-395;AP008214.1/3292975-3293073 39947:Oryza sativa
Japonica Group
Length = 99
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 tgtgaagtgtttgggggaactc 68
||||||||||||||||||||||
Sbjct: 68 tgtgaagtgtttgggggaactc 89
>RF00451;mir-395;AACV01010557.1/49631-49718 39947:Oryza sativa
Japonica Group
Length = 88
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 tgtgaagtgtttgggggaactc 68
||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactc 78
>RF00451;mir-395;AAAA02014816.1/37465-37552 39946:Oryza sativa
Indica Group
Length = 88
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 tgtgaagtgtttgggggaactc 68
||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactc 78
>RF00451;mir-395;ABXC01004449.1/8869-8999 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 gtgaagtgtttgggggaactc 68
|||||||||||||||||||||
Sbjct: 101 gtgaagtgtttgggggaactc 121
>RF00451;mir-395;ABXC01004559.1/90713-90831 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 gtgaagtgtttgggggaactc 68
|||||||||||||||||||||
Sbjct: 89 gtgaagtgtttgggggaactc 109
>RF00451;mir-395;AP008214.1/3292800-3292911 39947:Oryza sativa
Japonica Group
Length = 112
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 gtgaagtgtttgggggaactc 68
|||||||||||||||||||||
Sbjct: 82 gtgaagtgtttgggggaactc 102
>RF00451;mir-395;AP008210.1/32655890-32656029 39947:Oryza sativa
Japonica Group
Length = 140
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 gtgaagtgtttgggggaactc 68
|||||||||||||||||||||
Sbjct: 110 gtgaagtgtttgggggaactc 130
>RF00451;mir-395;AAAA02014816.1/37188-37273 39946:Oryza sativa
Indica Group
Length = 86
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 gtgaagtgtttgggggaactc 68
|||||||||||||||||||||
Sbjct: 56 gtgaagtgtttgggggaactc 76
