miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;ABXC01004449.1/9781-9883 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatgaggcaccattcaaactctgtttaagattaggtgtaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 gttcccttcaagcacttcacatgaggcaccattcaaactctgtttaagattaggtgtaat 72
Query: 61 gtgaagtgtttgggggaactc 81
|||||||||||||||||||||
Sbjct: 73 gtgaagtgtttgggggaactc 93
>RF00451;mir-395;ABXC01004440.1/120848-120746 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 97.6 bits (49), Expect = 2e-20
Identities = 76/83 (91%), Gaps = 4/83 (4%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatgaggcaccattcaa--actctgtttaagattaggtgta 58
||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||||
Sbjct: 13 gttcccttcaagcacttca--tgaggcaccattaaataactctatttaagattaggtgta 70
Query: 59 atgtgaagtgtttgggggaactc 81
|| ||||||||||||||||||||
Sbjct: 71 atatgaagtgtttgggggaactc 93
>RF00451;mir-395;ABXC01004559.1/90896-91004 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatga 24
||||||||||||||||||||||||
Sbjct: 13 gttcccttcaagcacttcacatga 36
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 aatgtgaagtgtttgggggaactc 81
||||||||||||||||||||||||
Sbjct: 76 aatgtgaagtgtttgggggaactc 99
>RF00451;mir-395;ABXC01004559.1/91066-91167 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatga 24
||||||||||||||||||||||||
Sbjct: 13 gttcccttcaagcacttcacatga 36
>RF00451;mir-395;AP008214.1/3292975-3293073 39947:Oryza sativa
Japonica Group
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 aatgtgaagtgtttgggggaactc 81
||||||||||||||||||||||||
Sbjct: 66 aatgtgaagtgtttgggggaactc 89
>RF00451;mir-395;ABXC01004559.1/91372-91477 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 gttcccttcaagcacttcacatg 23
|||||||||||||||||||||||
Sbjct: 13 gttcccttcaagcacttcacatg 35
>RF00451;mir-395;AF402959.1/7123-7037 4530:Oryza sativa (rice)
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 atgtgaagtgtttgggggaactc 81
|||||||||||||||||||||||
Sbjct: 55 atgtgaagtgtttgggggaactc 77
>RF00451;mir-395;AACV01010557.1/49631-49718 39947:Oryza sativa
Japonica Group
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 atgtgaagtgtttgggggaactc 81
|||||||||||||||||||||||
Sbjct: 56 atgtgaagtgtttgggggaactc 78
>RF00451;mir-395;AAAA02014816.1/37465-37552 39946:Oryza sativa
Indica Group
Length = 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 atgtgaagtgtttgggggaactc 81
|||||||||||||||||||||||
Sbjct: 56 atgtgaagtgtttgggggaactc 78
>RF00451;mir-395;ABXC01004440.1/121011-120921 4558:Sorghum bicolor
(sorghum)
Length = 91
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 tgtgaagtgtttgggggaactc 81
||||||||||||||||||||||
Sbjct: 60 tgtgaagtgtttgggggaactc 81
>RF00451;mir-395;ABXC01004449.1/9463-9548 4558:Sorghum bicolor
(sorghum)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 tgtgaagtgtttgggggaactc 81
||||||||||||||||||||||
Sbjct: 55 tgtgaagtgtttgggggaactc 76
>RF00451;mir-395;ABXC01004440.1/121340-121256 4558:Sorghum bicolor
(sorghum)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 tgtgaagtgtttgggggaactc 81
||||||||||||||||||||||
Sbjct: 54 tgtgaagtgtttgggggaactc 75
>RF00451;mir-395;AP008214.1/3293135-3293246 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 tgtgaagtgtttgggggaactc 81
||||||||||||||||||||||
Sbjct: 81 tgtgaagtgtttgggggaactc 102
>RF00451;mir-395;AP008210.1/31838919-31838832 39947:Oryza sativa
Japonica Group
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 tgtgaagtgtttgggggaactc 81
||||||||||||||||||||||
Sbjct: 57 tgtgaagtgtttgggggaactc 78
>RF00451;mir-395;AAAA02014891.1/20403-20488 39946:Oryza sativa
Indica Group
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 tgtgaagtgtttgggggaactc 81
||||||||||||||||||||||
Sbjct: 55 tgtgaagtgtttgggggaactc 76
>RF00451;mir-395;AP008214.1/3293470-3293581 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 tgtgaagtgtttgggggaactc 81
||||||||||||||||||||||
Sbjct: 81 tgtgaagtgtttgggggaactc 102
>RF00451;mir-395;AP004460.2/71210-71323 39947:Oryza sativa Japonica
Group
Length = 114
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 tgtgaagtgtttgggggaactc 81
||||||||||||||||||||||
Sbjct: 83 tgtgaagtgtttgggggaactc 104
