miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48480_far-miR396:pmrd
Length = 99
Score = 61.9 bits (31), Expect = 8e-11
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 1 ctccacaggctttcttgaactgtgaactcgatcgcgtgc 39
|||||||||||||||||||||||||||||| |||||||
Sbjct: 17 ctccacaggctttcttgaactgtgaactcgcgcgcgtgc 55
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 74 atggttcaagaaagtccttggaa 96
|||||||||||||||||||||||
Sbjct: 62 atggttcaagaaagtccttggaa 84
>48954_osa-miR396f:pmrd
Length = 176
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 ctccacaggctttcttgaactgtgaactcg 30
||||||||||||||||||||||||||||||
Sbjct: 9 ctccacaggctttcttgaactgtgaactcg 38
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 69 tgttgatggttcaagaaagtccttggaa 96
||||||| ||||||||||||||||||||
Sbjct: 140 tgttgatagttcaagaaagtccttggaa 167
>48953_osa-miR396f:pmrd
Length = 176
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 ctccacaggctttcttgaactgtgaactcg 30
||||||||||||||||||||||||||||||
Sbjct: 9 ctccacaggctttcttgaactgtgaactcg 38
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 69 tgttgatggttcaagaaagtccttggaa 96
||||||| ||||||||||||||||||||
Sbjct: 140 tgttgatagttcaagaaagtccttggaa 167
>48952_osa-miR396f:pmrd
Length = 176
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 ctccacaggctttcttgaactgtgaactcg 30
||||||||||||||||||||||||||||||
Sbjct: 9 ctccacaggctttcttgaactgtgaactcg 38
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 69 tgttgatggttcaagaaagtccttggaa 96
||||||| ||||||||||||||||||||
Sbjct: 140 tgttgatagttcaagaaagtccttggaa 167
>48797_oru-miR396:pmrd
Length = 178
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 ctccacaggctttcttgaactgtgaactcg 30
||||||||||||||||||||||||||||||
Sbjct: 10 ctccacaggctttcttgaactgtgaactcg 39
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 69 tgttgatggttcaagaaagtccttggaa 96
||||||| ||||||||||||||||||||
Sbjct: 141 tgttgatagttcaagaaagtccttggaa 168
>55085_zma-miR396n:pmrd
Length = 186
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 tccacaggctttcttgaactgtgaactcg 30
|||||||||||||||||||||||||||||
Sbjct: 3 tccacaggctttcttgaactgtgaactcg 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 69 tgttgatggttcaagaaagtccttggaa 96
||||||||||||||||||| || |||||
Sbjct: 158 tgttgatggttcaagaaagcccatggaa 185
>55084_zma-miR396m:pmrd
Length = 227
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 tccacaggctttcttgaactgtgaactcg 30
|||||||||||||||||||||||||||||
Sbjct: 3 tccacaggctttcttgaactgtgaactcg 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 69 tgttgatggttcaagaaagtccttggaa 96
||||||||||||||||||| || |||||
Sbjct: 199 tgttgatggttcaagaaagcccatggaa 226
>55076_zma-miR396e:pmrd
Length = 186
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 tccacaggctttcttgaactgtgaactcg 30
|||||||||||||||||||||||||||||
Sbjct: 3 tccacaggctttcttgaactgtgaactcg 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 69 tgttgatggttcaagaaagtccttggaa 96
||||||||||||||||||| || |||||
Sbjct: 158 tgttgatggttcaagaaagcccatggaa 185
>55075_zma-miR396d:pmrd
Length = 186
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 tccacaggctttcttgaactgtgaactcg 30
|||||||||||||||||||||||||||||
Sbjct: 3 tccacaggctttcttgaactgtgaactcg 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 69 tgttgatggttcaagaaagtccttggaa 96
||||||||||||||||||| || |||||
Sbjct: 158 tgttgatggttcaagaaagcccatggaa 185
>54488_sbi-miR396e:pmrd
Length = 189
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 tccacaggctttcttgaactgtgaactcg 30
|||||||||||||||||||||||||||||
Sbjct: 3 tccacaggctttcttgaactgtgaactcg 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 69 tgttgatggttcaagaaagtccttggaa 96
||||||||||||||||||| || |||||
Sbjct: 160 tgttgatggttcaagaaagcccatggaa 187
>48951_osa-miR396e:pmrd
Length = 184
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 tccacaggctttcttgaactgtgaactcg 30
|||||||||||||||||||||||||||||
Sbjct: 13 tccacaggctttcttgaactgtgaactcg 41
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 69 tgttgatggttcaagaaagtccttggaa 96
||||||||||||||||||| || |||||
Sbjct: 147 tgttgatggttcaagaaagcccatggaa 174
>48950_osa-miR396e:pmrd
Length = 184
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 tccacaggctttcttgaactgtgaactcg 30
|||||||||||||||||||||||||||||
Sbjct: 13 tccacaggctttcttgaactgtgaactcg 41
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 69 tgttgatggttcaagaaagtccttggaa 96
||||||||||||||||||| || |||||
Sbjct: 147 tgttgatggttcaagaaagcccatggaa 174
>48949_osa-miR396e:pmrd
Length = 184
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 tccacaggctttcttgaactgtgaactcg 30
|||||||||||||||||||||||||||||
Sbjct: 13 tccacaggctttcttgaactgtgaactcg 41
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 69 tgttgatggttcaagaaagtccttggaa 96
||||||||||||||||||| || |||||
Sbjct: 147 tgttgatggttcaagaaagcccatggaa 174
>48948_osa-miR396d:pmrd
Length = 142
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 tccacaggctttcttgaactgtgaactcg 30
|||||||||||||||||||||||||||||
Sbjct: 21 tccacaggctttcttgaactgtgaactcg 49
>48651_hvu-miR396:pmrd
Length = 107
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 70 gttgatggttcaagaaagtccttggaa 96
|||||||||||||||||||||||||||
Sbjct: 70 gttgatggttcaagaaagtccttggaa 96
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 ctccacaggctttcttgaactgtgaactcg 30
||||||||||||||||||||||| ||||||
Sbjct: 12 ctccacaggctttcttgaactgtcaactcg 41
