miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;ABXC01003010.1/105635-105521 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 190 bits (96), Expect = 2e-48
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 ctccacaggctttcttgaactgtgaactcgatcgcgtgctcttagcttgcttgctctcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ctccacaggctttcttgaactgtgaactcgatcgcgtgctcttagcttgcttgctctcgc 69
Query: 61 tcgctttgtgttgatggttcaagaaagtccttggaa 96
||||||||||||||||||||||||||||||||||||
Sbjct: 70 tcgctttgtgttgatggttcaagaaagtccttggaa 105
>RF00648;MIR396;AP004043.3/15829-15652 39947:Oryza sativa Japonica
Group
Length = 178
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 ctccacaggctttcttgaactgtgaactcg 30
||||||||||||||||||||||||||||||
Sbjct: 10 ctccacaggctttcttgaactgtgaactcg 39
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 69 tgttgatggttcaagaaagtccttggaa 96
||||||| ||||||||||||||||||||
Sbjct: 141 tgttgatagttcaagaaagtccttggaa 168
>RF00648;MIR396;EU950590.1/116-359 4577:Zea mays
Length = 244
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 tccacaggctttcttgaactgtgaactcg 30
|||||||||||||||||||||||||||||
Sbjct: 11 tccacaggctttcttgaactgtgaactcg 39
>RF00648;MIR396;ABXC01004473.1/64146-64350 4558:Sorghum bicolor
(sorghum)
Length = 205
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 tccacaggctttcttgaactgtgaactcg 30
|||||||||||||||||||||||||||||
Sbjct: 11 tccacaggctttcttgaactgtgaactcg 39
>RF00648;MIR396;AL732351.2/3841-4022 4530:Oryza sativa (rice)
Length = 182
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 tccacaggctttcttgaactgtgaactcg 30
|||||||||||||||||||||||||||||
Sbjct: 11 tccacaggctttcttgaactgtgaactcg 39
>RF00648;MIR396;AC226038.1/95545-95657 4641:Musa acuminata
Length = 113
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 ctccacaggctttcttgaactgtgaact 28
||||||||||||||||||||||||||||
Sbjct: 10 ctccacaggctttcttgaactgtgaact 37
