miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54488_sbi-miR396e:pmrd
Length = 189
Score = 375 bits (189), Expect = e-105
Identities = 189/189 (100%)
Strand = Plus / Plus
Query: 1 tttccacaggctttcttgaactgtgaactcgtgggggtagaaaccttgctgggtttggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttccacaggctttcttgaactgtgaactcgtgggggtagaaaccttgctgggtttggtt 60
Query: 61 cccatgtcggatggaatgcttggctcctcccagcgattcttccccggccgtgagtgaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cccatgtcggatggaatgcttggctcctcccagcgattcttccccggccgtgagtgaatt 120
Query: 121 gaattgcggggtttctcgcttcgctcggccggctctacctgttgatggttcaagaaagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaattgcggggtttctcgcttcgctcggccggctctacctgttgatggttcaagaaagcc 180
Query: 181 catggaaac 189
|||||||||
Sbjct: 181 catggaaac 189
>55085_zma-miR396n:pmrd
Length = 186
Score = 89.7 bits (45), Expect = 7e-19
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 144 ctcggccggctctacctgttgatggttcaagaaagcccatggaaa 188
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ctcggccggctctacctgttgatggttcaagaaagcccatggaaa 186
Score = 69.9 bits (35), Expect = 7e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 tttccacaggctttcttgaactgtgaactcgtggg 35
|||||||||||||||||||||||||||||||||||
Sbjct: 1 tttccacaggctttcttgaactgtgaactcgtggg 35
Score = 61.9 bits (31), Expect = 2e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 64 atgtcggatggaatgcttggctcctcccagc 94
|||||||||||||||||||||||||||||||
Sbjct: 46 atgtcggatggaatgcttggctcctcccagc 76
>55076_zma-miR396e:pmrd
Length = 186
Score = 89.7 bits (45), Expect = 7e-19
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 144 ctcggccggctctacctgttgatggttcaagaaagcccatggaaa 188
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ctcggccggctctacctgttgatggttcaagaaagcccatggaaa 186
Score = 69.9 bits (35), Expect = 7e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 tttccacaggctttcttgaactgtgaactcgtggg 35
|||||||||||||||||||||||||||||||||||
Sbjct: 1 tttccacaggctttcttgaactgtgaactcgtggg 35
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 64 atgtcggatggaatgcttggctcctcccagc 94
||||||||||||||||| |||||||||||||
Sbjct: 46 atgtcggatggaatgctgggctcctcccagc 76
>55075_zma-miR396d:pmrd
Length = 186
Score = 89.7 bits (45), Expect = 7e-19
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 144 ctcggccggctctacctgttgatggttcaagaaagcccatggaaa 188
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ctcggccggctctacctgttgatggttcaagaaagcccatggaaa 186
Score = 69.9 bits (35), Expect = 7e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 tttccacaggctttcttgaactgtgaactcgtggg 35
|||||||||||||||||||||||||||||||||||
Sbjct: 1 tttccacaggctttcttgaactgtgaactcgtggg 35
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 64 atgtcggatggaatgcttggctcctcccagc 94
|||||||||| ||||||||||||||||||||
Sbjct: 46 atgtcggatgaaatgcttggctcctcccagc 76
>48951_osa-miR396e:pmrd
Length = 184
Score = 75.8 bits (38), Expect = 1e-14
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 tttccacaggctttcttgaactgtgaactcgtgggggt 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tttccacaggctttcttgaactgtgaactcgtgggggt 48
Score = 73.8 bits (37), Expect = 4e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 153 ctctacctgttgatggttcaagaaagcccatggaaac 189
|||||||||||||||||||||||||||||||||||||
Sbjct: 140 ctctacctgttgatggttcaagaaagcccatggaaac 176
>48950_osa-miR396e:pmrd
Length = 184
Score = 75.8 bits (38), Expect = 1e-14
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 tttccacaggctttcttgaactgtgaactcgtgggggt 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tttccacaggctttcttgaactgtgaactcgtgggggt 48
Score = 73.8 bits (37), Expect = 4e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 153 ctctacctgttgatggttcaagaaagcccatggaaac 189
|||||||||||||||||||||||||||||||||||||
Sbjct: 140 ctctacctgttgatggttcaagaaagcccatggaaac 176
>48949_osa-miR396e:pmrd
Length = 184
Score = 75.8 bits (38), Expect = 1e-14
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 tttccacaggctttcttgaactgtgaactcgtgggggt 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tttccacaggctttcttgaactgtgaactcgtgggggt 48
Score = 73.8 bits (37), Expect = 4e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 153 ctctacctgttgatggttcaagaaagcccatggaaac 189
|||||||||||||||||||||||||||||||||||||
Sbjct: 140 ctctacctgttgatggttcaagaaagcccatggaaac 176
>48948_osa-miR396d:pmrd
Length = 142
Score = 75.8 bits (38), Expect = 1e-14
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 1 tttccacaggctttcttgaactgtgaactcgtgggggt 38
||||||||||||||||||||||||||||||||||||||
Sbjct: 19 tttccacaggctttcttgaactgtgaactcgtgggggt 56
>55084_zma-miR396m:pmrd
Length = 227
Score = 69.9 bits (35), Expect = 7e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 1 tttccacaggctttcttgaactgtgaactcgtggg 35
|||||||||||||||||||||||||||||||||||
Sbjct: 1 tttccacaggctttcttgaactgtgaactcgtggg 35
Score = 63.9 bits (32), Expect = 4e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 157 acctgttgatggttcaagaaagcccatggaaa 188
||||||||||||||||||||||||||||||||
Sbjct: 196 acctgttgatggttcaagaaagcccatggaaa 227
>48954_osa-miR396f:pmrd
Length = 176
Score = 61.9 bits (31), Expect = 2e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 tccacaggctttcttgaactgtgaactcgtg 33
|||||||||||||||||||||||||||||||
Sbjct: 10 tccacaggctttcttgaactgtgaactcgtg 40
>48953_osa-miR396f:pmrd
Length = 176
Score = 61.9 bits (31), Expect = 2e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 tccacaggctttcttgaactgtgaactcgtg 33
|||||||||||||||||||||||||||||||
Sbjct: 10 tccacaggctttcttgaactgtgaactcgtg 40
>48952_osa-miR396f:pmrd
Length = 176
Score = 61.9 bits (31), Expect = 2e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 tccacaggctttcttgaactgtgaactcgtg 33
|||||||||||||||||||||||||||||||
Sbjct: 10 tccacaggctttcttgaactgtgaactcgtg 40
>48797_oru-miR396:pmrd
Length = 178
Score = 61.9 bits (31), Expect = 2e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 3 tccacaggctttcttgaactgtgaactcgtg 33
|||||||||||||||||||||||||||||||
Sbjct: 11 tccacaggctttcttgaactgtgaactcgtg 41
>48480_far-miR396:pmrd
Length = 99
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 3 tccacaggctttcttgaactgtgaactcg 31
|||||||||||||||||||||||||||||
Sbjct: 18 tccacaggctttcttgaactgtgaactcg 46
>48651_hvu-miR396:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 3 tccacaggctttcttgaactgtgaactcg 31
|||||||||||||||||||||| ||||||
Sbjct: 13 tccacaggctttcttgaactgtcaactcg 41
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 161 gttgatggttcaagaaagcccatggaaa 188
|||||||||||||||||| || ||||||
Sbjct: 70 gttgatggttcaagaaagtccttggaaa 97
>48956_osa-miR396h:pmrd
Length = 141
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tttccacaggctttcttgaac 21
|||||||||||||||||||||
Sbjct: 109 tttccacaggctttcttgaac 129
>48955_osa-miR396g:pmrd
Length = 181
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tttccacaggctttcttgaac 21
|||||||||||||||||||||
Sbjct: 149 tttccacaggctttcttgaac 169
>48957_osa-miR396i:pmrd
Length = 121
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 ttccacaggctttcttgaac 21
||||||||||||||||||||
Sbjct: 90 ttccacaggctttcttgaac 109
>48506_ghr-miR396a:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 ttccacaggctttcttgaac 21
||||||||||||||||||||
Sbjct: 66 ttccacaggctttcttgaac 85
