miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00704;MIR397;ABXC01002436.1/11519-11410 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 180 bits (91), Expect = 2e-45
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 tcattgagtgcagcgttgatgagccagctggccggccagccgtgcgtccgccgccggcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tcattgagtgcagcgttgatgagccagctggccggccagccgtgcgtccgccgccggcgc 70
Query: 61 cggccacggctcaccggcgctgcactcaatt 91
|||||||||||||||||||||||||||||||
Sbjct: 71 cggccacggctcaccggcgctgcactcaatt 101
>RF00704;MIR397;ABIM01007603.1/10199-10104 3649:Carica papaya
(papaya)
Length = 96
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tcattgagtgcagcgttgatgag 23
|||||||||||||||||||||||
Sbjct: 11 tcattgagtgcagcgttgatgag 33
>RF00704;MIR397;EF148834.1/45-164 3695:Populus trichocarpa x
Populus deltoides
Length = 120
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcattgagtgcagcgttgatga 22
||||||||||||||||||||||
Sbjct: 11 tcattgagtgcagcgttgatga 32
>RF00704;MIR397;CAAP02007812.1/4570-4691 29760:Vitis vinifera
Length = 122
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcattgagtgcagcgttgatga 22
||||||||||||||||||||||
Sbjct: 11 tcattgagtgcagcgttgatga 32
>RF00704;MIR397;AK109752.1/55-170 39947:Oryza sativa Japonica
Group
Length = 116
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 3 attgagtgcagcgttgatgagccagctggccggc 36
|||||||||||||||||||| || || |||||||
Sbjct: 13 attgagtgcagcgttgatgaacctgccggccggc 46
>RF00704;MIR397;AP003766.3/37038-37149 39947:Oryza sativa Japonica
Group
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcattgagtgcagcgttgatga 22
||||||||||||||||||||||
Sbjct: 11 tcattgagtgcagcgttgatga 32
