miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54489_sbi-miR399a:pmrd
Length = 137
Score = 258 bits (130), Expect = 9e-70
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 7 cgccggcgaattacggggcagttcgtctttggcacaaaggcacgtccagaactactcgat 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 cgccggcgaattacggggcagttcgtctttggcacaaaggcacgtccagaactactcgat 67
Query: 67 gagggtcacttgagctgaactgaacatgcgtgccaaaggagaattgccctgcgattcgcc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 gagggtcacttgagctgaactgaacatgcgtgccaaaggagaattgccctgcgattcgcc 127
Query: 127 cgtgcagaag 136
||||||||||
Sbjct: 128 cgtgcagaag 137
>48966_osa-miR399c:pmrd
Length = 110
Score = 65.9 bits (33), Expect = 7e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 91 catgcgtgccaaaggagaattgccctgcgattc 123
|||||||||||||||||||||||||||||||||
Sbjct: 74 catgcgtgccaaaggagaattgccctgcgattc 106
>55093_zma-miR399c:pmrd
Length = 207
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 92 atgcgtgccaaaggagaattgccctgcgattc 123
||||||||||||||||||||||||||||||||
Sbjct: 163 atgcgtgccaaaggagaattgccctgcgattc 194
>54491_sbi-miR399c:pmrd
Length = 130
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 94 gcgtgccaaaggagaattgccctgcgattc 123
||||||||||||||||||||||||||||||
Sbjct: 88 gcgtgccaaaggagaattgccctgcgattc 117
>48964_osa-miR399a:pmrd
Length = 149
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 95 cgtgccaaaggagaattgccctgcgatt 122
||||||||||||||||||||||||||||
Sbjct: 117 cgtgccaaaggagaattgccctgcgatt 144
>55101_zma-miR399k:pmrd
Length = 168
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 92 atgcgtgccaaaggagaattgccctg 117
||||||||||||||||||||||||||
Sbjct: 143 atgcgtgccaaaggagaattgccctg 168
>54884_vvi-miR399h:pmrd
Length = 90
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 97 tgccaaaggagaattgccctgcgattcgc 125
|||||||||||||||||||||| ||||||
Sbjct: 60 tgccaaaggagaattgccctgccattcgc 88
>48965_osa-miR399b:pmrd
Length = 97
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 95 cgtgccaaaggagaattgccctgcgattc 123
|||||||||||||||||||||||| ||||
Sbjct: 65 cgtgccaaaggagaattgccctgccattc 93
>54496_sbi-miR399h:pmrd
Length = 132
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 97 tgccaaaggagaattgccctgcgattcg 124
|||||||||||||||||||||| |||||
Sbjct: 93 tgccaaaggagaattgccctgccattcg 120
>51752_ptc-miR399f:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 97 tgccaaaggagaattgccctgcgattcg 124
|||||||||||||||||||||| |||||
Sbjct: 72 tgccaaaggagaattgccctgccattcg 99
>55091_zma-miR399a:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 97 tgccaaaggagaattgccctgcgattc 123
|||||||||||||||||||||| ||||
Sbjct: 84 tgccaaaggagaattgccctgccattc 110
>54689_tae-miR399:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tgcgtgccaaaggagaattgccc 115
|||||||||||||||||||||||
Sbjct: 104 tgcgtgccaaaggagaattgccc 126
>53710_ptc-miRf11888-akr:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 97 tgccaaaggagaattgccctgcgattc 123
|||||||||||||||||||||| ||||
Sbjct: 28 tgccaaaggagaattgccctgccattc 2
>52804_ptc-miRf10982-akr:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 97 tgccaaaggagaattgccctgcgattc 123
|||||||||||||||||||||| ||||
Sbjct: 27 tgccaaaggagaattgccctgccattc 1
>51753_ptc-miR399g:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 97 tgccaaaggagaattgccctgcgattc 123
|||||||||||||||||||||| ||||
Sbjct: 65 tgccaaaggagaattgccctgccattc 91
>50193_osa-miRf10978-akr:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 97 tgccaaaggagaattgccctgcgattc 123
|||||||||||||||||||||| ||||
Sbjct: 79 tgccaaaggagaattgccctgccattc 105
>54498_sbi-miR399j:pmrd
Length = 93
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 97 tgccaaaggagaattgccctgc 118
||||||||||||||||||||||
Sbjct: 71 tgccaaaggagaattgccctgc 92
>55102_zma-miR399l:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 97 tgccaaaggagaattgccctg 117
|||||||||||||||||||||
Sbjct: 65 tgccaaaggagaattgccctg 85
>54877_vvi-miR399a:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 97 tgccaaaggagaattgccctg 117
|||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctg 87
>54492_sbi-miR399d:pmrd
Length = 205
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 97 tgccaaaggagaattgccctgcga 120
|||||||||||| |||||||||||
Sbjct: 166 tgccaaaggagagttgccctgcga 189
>48967_osa-miR399d:pmrd
Length = 286
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 97 tgccaaaggagaattgccctgcga 120
|||||||||||| |||||||||||
Sbjct: 256 tgccaaaggagagttgccctgcga 279
