miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;ABXC01002232.1/126477-126594 4558:Sorghum bicolor
           (sorghum)
          Length = 118

 Score =  234 bits (118), Expect = 2e-61
 Identities = 118/118 (100%)
 Strand = Plus / Plus

                                                                       
Query: 10  cggcgaattacggggcagttcgtctttggcacaaaggcacgtccagaactactcgatgag 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cggcgaattacggggcagttcgtctttggcacaaaggcacgtccagaactactcgatgag 60

                                                                     
Query: 70  ggtcacttgagctgaactgaacatgcgtgccaaaggagaattgccctgcgattcgccc 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggtcacttgagctgaactgaacatgcgtgccaaaggagaattgccctgcgattcgccc 118




>RF00445;mir-399;AAAA02017707.1/12909-13018 39946:Oryza sativa
           Indica Group
          Length = 110

 Score = 65.9 bits (33), Expect = 1e-10
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 91  catgcgtgccaaaggagaattgccctgcgattc 123
           |||||||||||||||||||||||||||||||||
Sbjct: 74  catgcgtgccaaaggagaattgccctgcgattc 106




>RF00445;mir-399;ABXC01006255.1/18853-18743 4558:Sorghum bicolor
           (sorghum)
          Length = 111

 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 94  gcgtgccaaaggagaattgccctgcgattc 123
           ||||||||||||||||||||||||||||||
Sbjct: 78  gcgtgccaaaggagaattgccctgcgattc 107




>RF00445;mir-399;AACV01002284.1/925-1073 39947:Oryza sativa Japonica
           Group
          Length = 149

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 95  cgtgccaaaggagaattgccctgcgatt 122
           ||||||||||||||||||||||||||||
Sbjct: 117 cgtgccaaaggagaattgccctgcgatt 144




>RF00445;mir-399;AM467681.2/18299-18208 29760:Vitis vinifera
          Length = 92

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 97  tgccaaaggagaattgccctgcgattcgc 125
           |||||||||||||||||||||| ||||||
Sbjct: 62  tgccaaaggagaattgccctgccattcgc 90




>RF00445;mir-399;AACV01003693.1/42206-42110 39947:Oryza sativa
           Japonica Group
          Length = 97

 Score = 50.1 bits (25), Expect = 8e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 95  cgtgccaaaggagaattgccctgcgattc 123
           |||||||||||||||||||||||| ||||
Sbjct: 65  cgtgccaaaggagaattgccctgccattc 93




>RF00445;mir-399;AARH01002119.1/15983-15882 3694:Populus trichocarpa
          Length = 102

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 97  tgccaaaggagaattgccctgcgattcg 124
           |||||||||||||||||||||| |||||
Sbjct: 72  tgccaaaggagaattgccctgccattcg 99




>RF00445;mir-399;ABXC01002522.1/3232-3121 4558:Sorghum bicolor
           (sorghum)
          Length = 112

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 97  tgccaaaggagaattgccctgcgattcg 124
           |||||||||||||||||||||| |||||
Sbjct: 82  tgccaaaggagaattgccctgccattcg 109




>RF00445;mir-399;ABXC01006771.1/37202-37314 4558:Sorghum bicolor
           (sorghum)
          Length = 113

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 97  tgccaaaggagaattgccctgcgattcg 124
           |||||||||||||||||||||| |||||
Sbjct: 83  tgccaaaggagaattgccctgccattcg 110




>RF00445;mir-399;ABIM01002717.1/30662-30788 3649:Carica papaya
           (papaya)
          Length = 127

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 97  tgccaaaggagaattgccctgcgattc 123
           |||||||||||||||||||||| ||||
Sbjct: 97  tgccaaaggagaattgccctgccattc 123




>RF00445;mir-399;AARH01002114.1/15624-15718 3694:Populus trichocarpa
          Length = 95

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 97  tgccaaaggagaattgccctgcgattc 123
           |||||||||||||||||||||| ||||
Sbjct: 65  tgccaaaggagaattgccctgccattc 91




>RF00445;mir-399;AAAA02019779.1/19949-19837 39946:Oryza sativa
           Indica Group
          Length = 113

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 97  tgccaaaggagaattgccctgcgattc 123
           |||||||||||||||||||||| ||||
Sbjct: 83  tgccaaaggagaattgccctgccattc 109