miRNEST 2.0, an integrative microRNA resource :: BLAST
>42820_zma-MIR399b:mirbase
Length = 122
Score = 153 bits (77), Expect = 4e-38
Identities = 113/123 (91%), Gaps = 4/123 (3%)
Strand = Plus / Plus
Query: 1 tagctcagggtgagaatcacagtgcagctctcctctggcatgaaggc--tgagagagtca 58
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 2 tagctcagggtgcgaatcacagtgcagctctcctctggcatgaaggctgtgagagaggca 61
Query: 59 tgagcagttttctggcctttccctgccaaaggagagctgccctgccattcattagccctg 118
||| | ||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 62 tgacaa--tttctggccttgccctgccaaaggagagctgtcctgccattcattagccctg 119
Query: 119 caa 121
|||
Sbjct: 120 caa 122
>42822_zma-MIR399d:mirbase
Length = 125
Score = 73.8 bits (37), Expect = 3e-14
Identities = 102/122 (83%), Gaps = 10/122 (8%)
Strand = Plus / Plus
Query: 9 ggtgagaatcacagtgcagctctcctctggcatgaaggctgag---agagtcatgagcag 65
|||||||||||||||| ||||||||||||||||||||| | |||| || || |||
Sbjct: 5 ggtgagaatcacagtgtggctctcctctggcatgaaggcgcggctgagaggcacgaacag 64
Query: 66 ttttctggcctttccctgcc------aaaggagagctgccctgccattcattagccctgc 119
||| |||||||| ||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 65 ttt-ctggccttcccctgccaatgccaaaggagagctgccctgccattcgttagccctgc 123
Query: 120 aa 121
||
Sbjct: 124 aa 125
>42049_osa-MIR399i:mirbase
Length = 116
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 73 gcctttccctgccaaaggagagctgccctgccattca 109
|||||||||||||||||||||||||||||||||||||
Sbjct: 77 gcctttccctgccaaaggagagctgccctgccattca 113
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 10 gtgagaatcacagtgcagctctcctctggcatg 42
|||||||||||||||||| ||||||||||||||
Sbjct: 1 gtgagaatcacagtgcagttctcctctggcatg 33
>42819_zma-MIR399a:mirbase
Length = 123
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 7 agggtgagaatcacagtgcagctctcctctggcatgaaggctg 49
||||||||||||||||||| | |||||||||||| ||||||||
Sbjct: 8 agggtgagaatcacagtgcggttctcctctggcacgaaggctg 50
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 77 ttccctgccaaaggagagctgccctgccattca 109
|||| |||||||||||| ||||||||||||||
Sbjct: 79 ttccttgccaaaggagaattgccctgccattca 111
>42596_sbi-MIR399h:mirbase
Length = 132
Score = 54.0 bits (27), Expect = 2e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 5 tcagggtgagaatcacagtgcagctctcctctggcatgaaggc 47
||||||| ||||||||||||| | |||||||||||||| ||||
Sbjct: 6 tcagggtaagaatcacagtgcggttctcctctggcatggaggc 48
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 78 tccctgccaaaggagagctgccctgccattc 108
|||||||||||||||| |||||||||||||
Sbjct: 89 tccctgccaaaggagaattgccctgccattc 119
>41803_bdi-MIR399b:mirbase
Length = 160
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 7 agggtgagaatcacagtgcagctctcctctggca 40
||||||||||| ||||||| | ||||||||||||
Sbjct: 16 agggtgagaattacagtgcggttctcctctggca 49
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagctgccctgccattcat 110
|||||||||||| |||||||||||||||
Sbjct: 110 tgccaaaggagaattgccctgccattcat 138
>41152_tcc-MIR399g:mirbase
Length = 112
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagctgccctgccattcatt 111
|||||||||||| ||||||||||||||||
Sbjct: 72 tgccaaaggagaattgccctgccattcatt 101
>40745_mtr-MIR399o:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagctgccctgc 103
||||||||||||||||||||||
Sbjct: 67 tgccaaaggagagctgccctgc 88
>42042_osa-MIR399b:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 10 gtgagaatcacagtgcagctctcctctggcatg 42
|||||||||||||||| ||||||||||||||
Sbjct: 1 gtgagaatcacagtgcgattctcctctggcatg 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagctgccctgccattca 109
|||||||||||| ||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgccattca 94
>41454_ptc-MIR399g:mirbase
Length = 94
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagagctgccctgccattca 109
||||||||||||| ||||||||||||||
Sbjct: 64 ctgccaaaggagaattgccctgccattca 92
>40732_mtr-MIR399b:mirbase
Length = 112
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagctgccctg 102
|||||||||||||||||||||
Sbjct: 73 tgccaaaggagagctgccctg 93
>40386_rco-MIR399d:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagctgccctg 102
|||||||||||||||||||||
Sbjct: 78 tgccaaaggagagctgccctg 98
>42828_zma-MIR399j:mirbase
Length = 175
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 cctgccaaaggagagctgccctgc 103
||||||||||||||| ||||||||
Sbjct: 152 cctgccaaaggagagttgccctgc 175
>42592_sbi-MIR399d:mirbase
Length = 205
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 cctgccaaaggagagctgccctgc 103
||||||||||||||| ||||||||
Sbjct: 164 cctgccaaaggagagttgccctgc 187
>42044_osa-MIR399d:mirbase
Length = 286
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 cctgccaaaggagagctgccctgc 103
||||||||||||||| ||||||||
Sbjct: 254 cctgccaaaggagagttgccctgc 277
>41250_csi-MIR399e:mirbase
Length = 154
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagctgccctgccattca 109
|||||||||||| ||||||||||||||
Sbjct: 18 tgccaaaggagaattgccctgccattca 45
>41248_csi-MIR399c:mirbase
Length = 149
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagctgccctgccattca 109
|||||||||||| ||||||||||||||
Sbjct: 109 tgccaaaggagaattgccctgccattca 136
>41063_ghr-MIR399d:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagctgccctgccattca 109
|||||||||||| ||||||||||||||
Sbjct: 67 tgccaaaggagatttgccctgccattca 94
>40744_mtr-MIR399n:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagctgccct 101
||||||||||||||||||||
Sbjct: 75 tgccaaaggagagctgccct 94
>40743_mtr-MIR399m:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagctgccct 101
||||||||||||||||||||
Sbjct: 60 tgccaaaggagagctgccct 79
>40734_mtr-MIR399d:mirbase
Length = 129
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagctgccct 101
||||||||||||||||||||
Sbjct: 90 tgccaaaggagagctgccct 109
