miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54490_sbi-miR399b:pmrd
Length = 123
Score = 204 bits (103), Expect = 1e-53
Identities = 113/115 (98%), Gaps = 1/115 (0%)
Strand = Plus / Plus
Query: 8 gggtgagaatcacagtgcagctctcctct-ggcatgaaggctgagagagtcatgagcagt 66
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 9 gggtgagaatcacagtgcagctctccttttggcatgaaggctgagagagtcatgagcagt 68
Query: 67 tttctggcctttccctgccaaaggagagctgccctgccattcattagccctgcaa 121
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 tttctggcctttccctgccaaaggagagctgccctgccattcattagccctgcaa 123
>55092_zma-miR399b:pmrd
Length = 122
Score = 153 bits (77), Expect = 4e-38
Identities = 113/123 (91%), Gaps = 4/123 (3%)
Strand = Plus / Plus
Query: 1 tagctcagggtgagaatcacagtgcagctctcctctggcatgaaggc--tgagagagtca 58
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 2 tagctcagggtgcgaatcacagtgcagctctcctctggcatgaaggctgtgagagaggca 61
Query: 59 tgagcagttttctggcctttccctgccaaaggagagctgccctgccattcattagccctg 118
||| | ||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 62 tgacaa--tttctggccttgccctgccaaaggagagctgtcctgccattcattagccctg 119
Query: 119 caa 121
|||
Sbjct: 120 caa 122
>55099_zma-miR399i:pmrd
Length = 83
Score = 85.7 bits (43), Expect = 7e-18
Identities = 76/85 (89%), Gaps = 4/85 (4%)
Strand = Plus / Plus
Query: 20 cagtgcagctctcctctggcatgaaggc--tgagagagtcatgagcagttttctggcctt 77
|||||||||||||||||||||||||||| |||||||| ||||| | |||||||||||
Sbjct: 1 cagtgcagctctcctctggcatgaaggctgtgagagaggcatgacaa--tttctggcctt 58
Query: 78 tccctgccaaaggagagctgccctg 102
||||||||||||||||||| ||||
Sbjct: 59 gccctgccaaaggagagctgtcctg 83
>55094_zma-miR399d:pmrd
Length = 125
Score = 73.8 bits (37), Expect = 3e-14
Identities = 102/122 (83%), Gaps = 10/122 (8%)
Strand = Plus / Plus
Query: 9 ggtgagaatcacagtgcagctctcctctggcatgaaggctgag---agagtcatgagcag 65
|||||||||||||||| ||||||||||||||||||||| | |||| || || |||
Sbjct: 5 ggtgagaatcacagtgtggctctcctctggcatgaaggcgcggctgagaggcacgaacag 64
Query: 66 ttttctggcctttccctgcc------aaaggagagctgccctgccattcattagccctgc 119
||| |||||||| ||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 65 ttt-ctggccttcccctgccaatgccaaaggagagctgccctgccattcgttagccctgc 123
Query: 120 aa 121
||
Sbjct: 124 aa 125
>48972_osa-miR399i:pmrd
Length = 116
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 73 gcctttccctgccaaaggagagctgccctgccattca 109
|||||||||||||||||||||||||||||||||||||
Sbjct: 77 gcctttccctgccaaaggagagctgccctgccattca 113
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 10 gtgagaatcacagtgcagctctcctctggcatg 42
|||||||||||||||||| ||||||||||||||
Sbjct: 1 gtgagaatcacagtgcagttctcctctggcatg 33
>55091_zma-miR399a:pmrd
Length = 123
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 7 agggtgagaatcacagtgcagctctcctctggcatgaaggctg 49
||||||||||||||||||| | |||||||||||| ||||||||
Sbjct: 8 agggtgagaatcacagtgcggttctcctctggcacgaaggctg 50
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 77 ttccctgccaaaggagagctgccctgccattca 109
|||| |||||||||||| ||||||||||||||
Sbjct: 79 ttccttgccaaaggagaattgccctgccattca 111
>54496_sbi-miR399h:pmrd
Length = 132
Score = 54.0 bits (27), Expect = 2e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 5 tcagggtgagaatcacagtgcagctctcctctggcatgaaggc 47
||||||| ||||||||||||| | |||||||||||||| ||||
Sbjct: 6 tcagggtaagaatcacagtgcggttctcctctggcatggaggc 48
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 78 tccctgccaaaggagagctgccctgccattc 108
|||||||||||||||| |||||||||||||
Sbjct: 89 tccctgccaaaggagaattgccctgccattc 119
>50193_osa-miRf10978-akr:pmrd
Length = 105
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 gaatcacagtgcagctctcctctggcatg 42
|||||||||||||| ||||||||||||||
Sbjct: 1 gaatcacagtgcagttctcctctggcatg 29
Score = 46.1 bits (23), Expect = 6e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 78 tccctgccaaaggagagctgccctgccattc 108
|||||||||||||||| |||||||||||||
Sbjct: 75 tccctgccaaaggagaattgccctgccattc 105
>55100_zma-miR399j:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 27 gctctcctctggcatgaaggc 47
|||||||||||||||||||||
Sbjct: 8 gctctcctctggcatgaaggc 28
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagctgccctg 102
|||||||||||||||||||||
Sbjct: 71 tgccaaaggagagctgccctg 91
>53710_ptc-miRf11888-akr:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 81 ctgccaaaggagagctgccctgccattca 109
||||||||||||| ||||||||||||||
Sbjct: 29 ctgccaaaggagaattgccctgccattca 1
>51753_ptc-miR399g:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 81 ctgccaaaggagagctgccctgccattca 109
||||||||||||| ||||||||||||||
Sbjct: 64 ctgccaaaggagaattgccctgccattca 92
>48965_osa-miR399b:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 9e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 10 gtgagaatcacagtgcagctctcctctggcatg 42
|||||||||||||||| ||||||||||||||
Sbjct: 1 gtgagaatcacagtgcgattctcctctggcatg 33
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagctgccctgccattca 109
|||||||||||| ||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctgccattca 94
>48751_mtr-miR399b:pmrd
Length = 112
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagctgccctg 102
|||||||||||||||||||||
Sbjct: 73 tgccaaaggagagctgccctg 93
>54492_sbi-miR399d:pmrd
Length = 205
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 cctgccaaaggagagctgccctgc 103
||||||||||||||| ||||||||
Sbjct: 164 cctgccaaaggagagttgccctgc 187
>48967_osa-miR399d:pmrd
Length = 286
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 80 cctgccaaaggagagctgccctgc 103
||||||||||||||| ||||||||
Sbjct: 254 cctgccaaaggagagttgccctgc 277
>48753_mtr-miR399d:pmrd
Length = 129
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagctgccct 101
||||||||||||||||||||
Sbjct: 90 tgccaaaggagagctgccct 109
