miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;ABXC01002521.1/23780-23678 4558:Sorghum bicolor
(sorghum)
Length = 103
Score = 204 bits (103), Expect = 2e-52
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 10 gtgagaatcacagtgcagctctcctctggcatgaaggctgagagagtcatgagcagtttt 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtgagaatcacagtgcagctctcctctggcatgaaggctgagagagtcatgagcagtttt 60
Query: 70 ctggcctttccctgccaaaggagagctgccctgccattcatta 112
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctggcctttccctgccaaaggagagctgccctgccattcatta 103
>RF00445;mir-399;EU949135.1/83-185 4577:Zea mays
Length = 103
Score = 117 bits (59), Expect = 3e-26
Identities = 92/101 (91%), Gaps = 4/101 (3%)
Strand = Plus / Plus
Query: 14 gaatcacagtgcagctctcctctggcatgaaggc--tgagagagtcatgagcagttttct 71
|||||||||||||||||||||||||||||||||| |||||||| ||||| | |||||
Sbjct: 5 gaatcacagtgcagctctcctctggcatgaaggctgtgagagaggcatgacaa--tttct 62
Query: 72 ggcctttccctgccaaaggagagctgccctgccattcatta 112
|||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 63 ggccttgccctgccaaaggagagctgtcctgccattcatta 103
>RF00445;mir-399;AP008208.1/7649784-7649899 39947:Oryza sativa
Japonica Group
Length = 116
Score = 73.8 bits (37), Expect = 5e-13
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 73 gcctttccctgccaaaggagagctgccctgccattca 109
|||||||||||||||||||||||||||||||||||||
Sbjct: 77 gcctttccctgccaaaggagagctgccctgccattca 113
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 10 gtgagaatcacagtgcagctctcctctggcatg 42
|||||||||||||||||| ||||||||||||||
Sbjct: 1 gtgagaatcacagtgcagttctcctctggcatg 33
>RF00445;mir-399;EU949059.1/171-61 4577:Zea mays
Length = 111
Score = 60.0 bits (30), Expect = 7e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 10 gtgagaatcacagtgcagctctcctctggcatgaaggc 47
||||||||||||||| |||||||||||||||||||||
Sbjct: 1 gtgagaatcacagtgtggctctcctctggcatgaaggc 38
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 82 tgccaaaggagagctgccctgccattc 108
|||||||||||||||||||||||||||
Sbjct: 81 tgccaaaggagagctgccctgccattc 107
>RF00445;mir-399;AAAA02019779.1/19949-19837 39946:Oryza sativa
Indica Group
Length = 113
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 10 gtgagaatcacagtgcagctctcctctggcatg 42
|||||||||||||||||| ||||||||||||||
Sbjct: 1 gtgagaatcacagtgcagttctcctctggcatg 33
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 78 tccctgccaaaggagagctgccctgccattca 109
|||||||||||||||| ||||||||||||||
Sbjct: 79 tccctgccaaaggagaattgccctgccattca 110
>RF00445;mir-399;ABXC01002522.1/3232-3121 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 12 gagaatcacagtgcagctctcctctggcatgaa 44
|||||||||||||| | ||||||||||||||||
Sbjct: 3 gagaatcacagtgcggttctcctctggcatgaa 35
>RF00445;mir-399;ABXC01006771.1/37202-37314 4558:Sorghum bicolor
(sorghum)
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 13 agaatcacagtgcagctctcctctggcatgaaggc 47
||||||||||||| | |||||||||||||| ||||
Sbjct: 4 agaatcacagtgcggttctcctctggcatggaggc 38
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 78 tccctgccaaaggagagctgccctgccattc 108
|||||||||||||||| |||||||||||||
Sbjct: 79 tccctgccaaaggagaattgccctgccattc 109
