miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54491_sbi-miR399c:pmrd
Length = 130
Score = 258 bits (130), Expect = 9e-70
Identities = 130/130 (100%)
Strand = Plus / Plus
Query: 1 catatgctgagcatgaattacagggtacatctcctttggcacagatgcatgcagcagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 catatgctgagcatgaattacagggtacatctcctttggcacagatgcatgcagcagaat 60
Query: 61 gcatatatgcatatgcgaaactgtcgagcgtgccaaaggagaattgccctgcgattctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcatatatgcatatgcgaaactgtcgagcgtgccaaaggagaattgccctgcgattctag 120
Query: 121 gctctgcaat 130
||||||||||
Sbjct: 121 gctctgcaat 130
>55093_zma-miR399c:pmrd
Length = 207
Score = 73.8 bits (37), Expect = 3e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 88 gcgtgccaaaggagaattgccctgcgattctaggctc 124
|||||||||||||||||||||||||||||||||||||
Sbjct: 165 gcgtgccaaaggagaattgccctgcgattctaggctc 201
Score = 71.9 bits (36), Expect = 1e-13
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 5 tgctgagcatgaattacagggtacatctcctttggcacag 44
|||||||||||||||||||||||| |||||||||||||||
Sbjct: 5 tgctgagcatgaattacagggtacgtctcctttggcacag 44
>54489_sbi-miR399a:pmrd
Length = 137
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 88 gcgtgccaaaggagaattgccctgcgattc 117
||||||||||||||||||||||||||||||
Sbjct: 95 gcgtgccaaaggagaattgccctgcgattc 124
>48966_osa-miR399c:pmrd
Length = 110
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 88 gcgtgccaaaggagaattgccctgcgattc 117
||||||||||||||||||||||||||||||
Sbjct: 77 gcgtgccaaaggagaattgccctgcgattc 106
>48964_osa-miR399a:pmrd
Length = 149
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 89 cgtgccaaaggagaattgccctgcgatt 116
||||||||||||||||||||||||||||
Sbjct: 117 cgtgccaaaggagaattgccctgcgatt 144
>48965_osa-miR399b:pmrd
Length = 97
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 89 cgtgccaaaggagaattgccctgcgattc 117
|||||||||||||||||||||||| ||||
Sbjct: 65 cgtgccaaaggagaattgccctgccattc 93
>55101_zma-miR399k:pmrd
Length = 168
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 88 gcgtgccaaaggagaattgccctg 111
||||||||||||||||||||||||
Sbjct: 145 gcgtgccaaaggagaattgccctg 168
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 21 cagggtacatctcctttggcacag 44
|||||||| |||||||||||||||
Sbjct: 1 cagggtacgtctcctttggcacag 24
>55091_zma-miR399a:pmrd
Length = 123
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 91 tgccaaaggagaattgccctgcgattc 117
|||||||||||||||||||||| ||||
Sbjct: 84 tgccaaaggagaattgccctgccattc 110
>54884_vvi-miR399h:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 91 tgccaaaggagaattgccctgcgattc 117
|||||||||||||||||||||| ||||
Sbjct: 60 tgccaaaggagaattgccctgccattc 86
>54496_sbi-miR399h:pmrd
Length = 132
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 91 tgccaaaggagaattgccctgcgattc 117
|||||||||||||||||||||| ||||
Sbjct: 93 tgccaaaggagaattgccctgccattc 119
>53710_ptc-miRf11888-akr:pmrd
Length = 89
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 91 tgccaaaggagaattgccctgcgattc 117
|||||||||||||||||||||| ||||
Sbjct: 28 tgccaaaggagaattgccctgccattc 2
>52804_ptc-miRf10982-akr:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 91 tgccaaaggagaattgccctgcgattc 117
|||||||||||||||||||||| ||||
Sbjct: 27 tgccaaaggagaattgccctgccattc 1
>51753_ptc-miR399g:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 91 tgccaaaggagaattgccctgcgattc 117
|||||||||||||||||||||| ||||
Sbjct: 65 tgccaaaggagaattgccctgccattc 91
>51752_ptc-miR399f:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 91 tgccaaaggagaattgccctgcgattc 117
|||||||||||||||||||||| ||||
Sbjct: 72 tgccaaaggagaattgccctgccattc 98
>50193_osa-miRf10978-akr:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 91 tgccaaaggagaattgccctgcgattc 117
|||||||||||||||||||||| ||||
Sbjct: 79 tgccaaaggagaattgccctgccattc 105
>54689_tae-miR399:pmrd
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 88 gcgtgccaaaggagaattgccc 109
||||||||||||||||||||||
Sbjct: 105 gcgtgccaaaggagaattgccc 126
>54498_sbi-miR399j:pmrd
Length = 93
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 91 tgccaaaggagaattgccctgc 112
||||||||||||||||||||||
Sbjct: 71 tgccaaaggagaattgccctgc 92
>55102_zma-miR399l:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 tgccaaaggagaattgccctg 111
|||||||||||||||||||||
Sbjct: 65 tgccaaaggagaattgccctg 85
>54877_vvi-miR399a:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 tgccaaaggagaattgccctg 111
|||||||||||||||||||||
Sbjct: 67 tgccaaaggagaattgccctg 87
>54492_sbi-miR399d:pmrd
Length = 205
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 91 tgccaaaggagaattgccctgcga 114
|||||||||||| |||||||||||
Sbjct: 166 tgccaaaggagagttgccctgcga 189
>48967_osa-miR399d:pmrd
Length = 286
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 91 tgccaaaggagaattgccctgcga 114
|||||||||||| |||||||||||
Sbjct: 256 tgccaaaggagagttgccctgcga 279
>48754_mtr-miR399e:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 91 tgccaaaggagaattgccctgcgattct 118
|||||||||||| |||||| ||||||||
Sbjct: 95 tgccaaaggagatttgcccagcgattct 122
>48750_mtr-miR399a:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 91 tgccaaaggagaattgccctgcgattct 118
|||||||||||| |||||| ||||||||
Sbjct: 95 tgccaaaggagatttgcccagcgattct 122
