miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>54493_sbi-miR399e:pmrd
          Length = 126

 Score =  250 bits (126), Expect = 2e-67
 Identities = 126/126 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatgcggggccatgcattaccgggtgggtctcctctggcagtaacttggctggtcgcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   acatgcggggccatgcattaccgggtgggtctcctctggcagtaacttggctggtcgcct 60

                                                                       
Query: 61  ggtccatgatacctgcgtgcagacactgccaaaggagatttgcccagcaatgcagttttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggtccatgatacctgcgtgcagacactgccaaaggagatttgcccagcaatgcagttttg 120

                 
Query: 121 agtccc 126
           ||||||
Sbjct: 121 agtccc 126




>49373_osa-miRf10158-akr:pmrd
          Length = 112

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 86  ctgccaaaggagatttgcccagcaatgca 114
           |||||||||||||||||||||||||||||
Sbjct: 84  ctgccaaaggagatttgcccagcaatgca 112




>48968_osa-miR399e:pmrd
          Length = 118

 Score = 58.0 bits (29), Expect = 2e-09
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 86  ctgccaaaggagatttgcccagcaatgca 114
           |||||||||||||||||||||||||||||
Sbjct: 87  ctgccaaaggagatttgcccagcaatgca 115




>48971_osa-miR399h:pmrd
          Length = 99

 Score = 56.0 bits (28), Expect = 6e-09
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 84  cactgccaaaggagatttgcccagcaatgcag 115
           ||||||||||||||| ||||||||||||||||
Sbjct: 66  cactgccaaaggagacttgcccagcaatgcag 97




>54494_sbi-miR399f:pmrd
          Length = 120

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 86  ctgccaaaggagatttgcccagcaat 111
           ||||||||||||||||||||||||||
Sbjct: 80  ctgccaaaggagatttgcccagcaat 105




>48969_osa-miR399f:pmrd
          Length = 117

 Score = 52.0 bits (26), Expect = 1e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 86  ctgccaaaggagatttgcccagcaat 111
           ||||||||||||||||||||||||||
Sbjct: 86  ctgccaaaggagatttgcccagcaat 111




>48970_osa-miR399g:pmrd
          Length = 119

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 86  ctgccaaaggagatttgcccagc 108
           |||||||||||||||||||||||
Sbjct: 88  ctgccaaaggagatttgcccagc 110




>48754_mtr-miR399e:pmrd
          Length = 134

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 86  ctgccaaaggagatttgcccagc 108
           |||||||||||||||||||||||
Sbjct: 94  ctgccaaaggagatttgcccagc 116




>48750_mtr-miR399a:pmrd
          Length = 134

 Score = 46.1 bits (23), Expect = 6e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 86  ctgccaaaggagatttgcccagc 108
           |||||||||||||||||||||||
Sbjct: 94  ctgccaaaggagatttgcccagc 116




>54883_vvi-miR399g:pmrd
          Length = 113

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 84  cactgccaaaggagatttgccc 105
           ||||||||||||||||||||||
Sbjct: 80  cactgccaaaggagatttgccc 101




>54881_vvi-miR399e:pmrd
          Length = 112

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 86  ctgccaaaggagatttgcccagcaat 111
           |||||||||||||||||||| |||||
Sbjct: 81  ctgccaaaggagatttgcccggcaat 106




>51747_ptc-miR399a:pmrd
          Length = 120

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 86  ctgccaaaggagatttgcccagcaat 111
           |||||||||||||||||||| |||||
Sbjct: 90  ctgccaaaggagatttgccccgcaat 115




>47535_ath-miRf10435-akr:pmrd
          Length = 92

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 86  ctgccaaaggagatttgcccagcaat 111
           |||||||||||||||||||| |||||
Sbjct: 65  ctgccaaaggagatttgccccgcaat 90




>47018_ath-miR399d:pmrd
          Length = 100

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 86  ctgccaaaggagatttgcccagcaat 111
           |||||||||||||||||||| |||||
Sbjct: 69  ctgccaaaggagatttgccccgcaat 94




>52630_ptc-miRf10808-akr:pmrd
          Length = 110

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 87  tgccaaaggagatttgcccagcaat 111
           ||||||||||||||||||| |||||
Sbjct: 25  tgccaaaggagatttgcccggcaat 1




>51890_ptc-miRf10068-akr:pmrd
          Length = 110

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 87  tgccaaaggagatttgcccagcaat 111
           ||||||||||||||||||| |||||
Sbjct: 25  tgccaaaggagatttgcccggcaat 1




>51749_ptc-miR399c:pmrd
          Length = 126

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 87  tgccaaaggagatttgcccagcaat 111
           ||||||||||||||||||| |||||
Sbjct: 97  tgccaaaggagatttgcccggcaat 121




>51748_ptc-miR399b:pmrd
          Length = 126

 Score = 42.1 bits (21), Expect = 1e-04
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 87  tgccaaaggagatttgcccagcaat 111
           ||||||||||||||||||| |||||
Sbjct: 97  tgccaaaggagatttgcccggcaat 121




>53709_ptc-miRf11887-akr:pmrd
          Length = 99

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 86  ctgccaaaggagatttgcccagcaatgc 113
           ||||||||||| |||||| |||||||||
Sbjct: 33  ctgccaaaggaaatttgctcagcaatgc 6




>51757_ptc-miR399k:pmrd
          Length = 94

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 86  ctgccaaaggagatttgcccagcaatgc 113
           ||||||||||| |||||| |||||||||
Sbjct: 31  ctgccaaaggaaatttgctcagcaatgc 4




>51751_ptc-miR399e:pmrd
          Length = 114

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 84  cactgccaaaggagatttgcccagcaat 111
           ||||||||||| |||||||||| |||||
Sbjct: 82  cactgccaaagaagatttgccccgcaat 109




>51750_ptc-miR399d:pmrd
          Length = 114

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 84  cactgccaaaggagatttgcccagcaat 111
           ||||||||||| |||||||||| |||||
Sbjct: 82  cactgccaaagaagatttgccccgcaat 109




>48377_bna-miR399:pmrd
          Length = 102

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  ctgccaaaggagatttgccc 105
           ||||||||||||||||||||
Sbjct: 80  ctgccaaaggagatttgccc 99




>47020_ath-miR399f:pmrd
          Length = 118

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  ctgccaaaggagatttgccc 105
           ||||||||||||||||||||
Sbjct: 87  ctgccaaaggagatttgccc 106




>47019_ath-miR399e:pmrd
          Length = 109

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 86  ctgccaaaggagatttgcccagcaatgc 113
           |||||||||||||||||||  |||||||
Sbjct: 78  ctgccaaaggagatttgcctcgcaatgc 105




>47015_ath-miR399a:pmrd
          Length = 123

 Score = 40.1 bits (20), Expect = 4e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  ctgccaaaggagatttgccc 105
           ||||||||||||||||||||
Sbjct: 92  ctgccaaaggagatttgccc 111