miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;ABXC01006255.1/20311-20417 4558:Sorghum bicolor
           (sorghum)
          Length = 107

 Score =  212 bits (107), Expect = 8e-55
 Identities = 107/107 (100%)
 Strand = Plus / Plus

                                                                       
Query: 11  ccatgcattaccgggtgggtctcctctggcagtaacttggctggtcgcctggtccatgat 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ccatgcattaccgggtgggtctcctctggcagtaacttggctggtcgcctggtccatgat 60

                                                          
Query: 71  acctgcgtgcagacactgccaaaggagatttgcccagcaatgcagtt 117
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acctgcgtgcagacactgccaaaggagatttgcccagcaatgcagtt 107




>RF00445;mir-399;AP008207.1/30470987-30470870 39947:Oryza sativa
           Japonica Group
          Length = 118

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                        
Query: 86  ctgccaaaggagatttgcccagcaatgca 114
           |||||||||||||||||||||||||||||
Sbjct: 87  ctgccaaaggagatttgcccagcaatgca 115




>RF00445;mir-399;AAAA02017707.1/11015-10916 39946:Oryza sativa
           Indica Group
          Length = 100

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 84  cactgccaaaggagatttgcccagcaatgcag 115
           ||||||||||||||| ||||||||||||||||
Sbjct: 67  cactgccaaaggagacttgcccagcaatgcag 98




>RF00445;mir-399;AC108499.3/125908-126006 39947:Oryza sativa
           Japonica Group
          Length = 99

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                           
Query: 84  cactgccaaaggagatttgcccagcaatgcag 115
           ||||||||||||||| ||||||||||||||||
Sbjct: 66  cactgccaaaggagacttgcccagcaatgcag 97




>RF00445;mir-399;AASG02004610.1/3240-3121 3988:Ricinus communis
           (castor bean)
          Length = 120

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 86  ctgccaaaggagatttgcccagcaat 111
           ||||||||||||||||||||||||||
Sbjct: 89  ctgccaaaggagatttgcccagcaat 114




>RF00445;mir-399;AC160628.37/88700-88815 3880:Medicago truncatula
           (barrel medic)
          Length = 116

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 86  ctgccaaaggagatttgcccagcaat 111
           ||||||||||||||||||||||||||
Sbjct: 85  ctgccaaaggagatttgcccagcaat 110




>RF00445;mir-399;ABXC01006771.1/34940-34840 4558:Sorghum bicolor
           (sorghum)
          Length = 101

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 86  ctgccaaaggagatttgcccagcaat 111
           ||||||||||||||||||||||||||
Sbjct: 70  ctgccaaaggagatttgcccagcaat 95




>RF00445;mir-399;AP008212.1/20540927-20540811 39947:Oryza sativa
           Japonica Group
          Length = 117

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 86  ctgccaaaggagatttgcccagcaat 111
           ||||||||||||||||||||||||||
Sbjct: 86  ctgccaaaggagatttgcccagcaat 111




>RF00445;mir-399;EU626442.1/66161-66296 29730:Gossypium raimondii
          Length = 136

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 84  cactgccaaaggagatttgcccagcaat 111
           |||||||||||||||||||||| |||||
Sbjct: 103 cactgccaaaggagatttgccccgcaat 130




>RF00445;mir-399;AY632360.1/45897-46033 3635:Gossypium hirsutum
           (upland cotton)
          Length = 137

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 84  cactgccaaaggagatttgcccagcaat 111
           |||||||||||||||||||||| |||||
Sbjct: 104 cactgccaaaggagatttgccccgcaat 131




>RF00445;mir-399;AY632359.1/44840-44976 3635:Gossypium hirsutum
           (upland cotton)
          Length = 137

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 84  cactgccaaaggagatttgcccagcaat 111
           |||||||||||||||||||||| |||||
Sbjct: 104 cactgccaaaggagatttgccccgcaat 131




>RF00445;mir-399;EU626443.1/56309-56427 47615:Gossypioides kirkii
          Length = 119

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 84  cactgccaaaggagatttgcccagcaat 111
           |||||||||||||||||||||| |||||
Sbjct: 86  cactgccaaaggagatttgccccgcaat 113




>RF00445;mir-399;ABIM01002717.1/22515-22407 3649:Carica papaya
           (papaya)
          Length = 109

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 84  cactgccaaaggagatttgcccagcaat 111
           |||||||||||||||||||||| |||||
Sbjct: 76  cactgccaaaggagatttgcccggcaat 103




>RF00445;mir-399;AASG02001979.1/7364-7257 3988:Ricinus communis
           (castor bean)
          Length = 108

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 84  cactgccaaaggagatttgcccagcaat 111
           |||||||||||||||||||||| |||||
Sbjct: 75  cactgccaaaggagatttgccccgcaat 102




>RF00445;mir-399;AC160628.37/72380-72494 3880:Medicago truncatula
           (barrel medic)
          Length = 115

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 86  ctgccaaaggagatttgcccagc 108
           |||||||||||||||||||||||
Sbjct: 84  ctgccaaaggagatttgcccagc 106




>RF00445;mir-399;AM470981.2/5848-5733 29760:Vitis vinifera
          Length = 116

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 84  cactgccaaaggagatttgcccagcaa 110
           |||||||||||||||||||||| ||||
Sbjct: 83  cactgccaaaggagatttgccccgcaa 109




>RF00445;mir-399;AACV01003694.1/9714-9596 39947:Oryza sativa
           Japonica Group
          Length = 119

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 86  ctgccaaaggagatttgcccagc 108
           |||||||||||||||||||||||
Sbjct: 88  ctgccaaaggagatttgcccagc 110




>RF00445;mir-399;ABIM01002716.1/17825-17941 3649:Carica papaya
           (papaya)
          Length = 117

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 86  ctgccaaaggagatttgcccag 107
           ||||||||||||||||||||||
Sbjct: 86  ctgccaaaggagatttgcccag 107




>RF00445;mir-399;ABIM01002717.1/16187-16280 3649:Carica papaya
           (papaya)
          Length = 94

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 86  ctgccaaaggagatttgcccagcaat 111
           |||||||||||||||||||| |||||
Sbjct: 63  ctgccaaaggagatttgcccggcaat 88




>RF00445;mir-399;AC004481.3/13564-13465 3702:Arabidopsis thaliana
           (thale cress)
          Length = 100

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 86  ctgccaaaggagatttgcccagcaat 111
           |||||||||||||||||||| |||||
Sbjct: 69  ctgccaaaggagatttgccccgcaat 94




>RF00445;mir-399;AARH01002119.1/17334-17454 3694:Populus trichocarpa
          Length = 121

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 86  ctgccaaaggagatttgcccagcaat 111
           |||||||||||||||||||| |||||
Sbjct: 90  ctgccaaaggagatttgccccgcaat 115




>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
          Length = 116

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 86  ctgccaaaggagatttgcccagcaat 111
           |||||||||||||||||||| |||||
Sbjct: 85  ctgccaaaggagatttgcccggcaat 110




>RF00445;mir-399;AM467681.2/20491-20605 29760:Vitis vinifera
          Length = 115

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 84  cactgccaaaggagatttgccc 105
           ||||||||||||||||||||||
Sbjct: 82  cactgccaaaggagatttgccc 103