miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;ABXC01006771.1/34940-34840 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 200 bits (101), Expect = 3e-51
Identities = 101/101 (100%)
Strand = Plus / Plus
Query: 11 tcgaggattaccgggccatttctccttgggcagagtaattgaattttactttgctggatc 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcgaggattaccgggccatttctccttgggcagagtaattgaattttactttgctggatc 60
Query: 71 cggtttgctctgccaaaggagatttgcccagcaatccacat 111
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cggtttgctctgccaaaggagatttgcccagcaatccacat 101
>RF00445;mir-399;AP008212.1/20540927-20540811 39947:Oryza sativa
Japonica Group
Length = 117
Score = 67.9 bits (34), Expect = 3e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 78 ctctgccaaaggagatttgcccagcaatccacat 111
||||||||||||||||||||||||||||||||||
Sbjct: 84 ctctgccaaaggagatttgcccagcaatccacat 117
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 15 ggattaccgggccatttctccttgggcagag 45
||||||||||||||| |||||||||||||||
Sbjct: 5 ggattaccgggccatgtctccttgggcagag 35
>RF00445;mir-399;AASG02004610.1/3240-3121 3988:Ricinus communis
(castor bean)
Length = 120
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 79 tctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||||||||||
Sbjct: 88 tctgccaaaggagatttgcccagcaat 114
>RF00445;mir-399;AC160628.37/88700-88815 3880:Medicago truncatula
(barrel medic)
Length = 116
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
||||||||||||||||||||||||||
Sbjct: 85 ctgccaaaggagatttgcccagcaat 110
>RF00445;mir-399;ABXC01006255.1/20311-20417 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
||||||||||||||||||||||||||
Sbjct: 76 ctgccaaaggagatttgcccagcaat 101
>RF00445;mir-399;AP008207.1/30470987-30470870 39947:Oryza sativa
Japonica Group
Length = 118
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
||||||||||||||||||||||||||
Sbjct: 87 ctgccaaaggagatttgcccagcaat 112
>RF00445;mir-399;AC004481.3/13564-13465 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 ctctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||||| |||||
Sbjct: 67 ctctgccaaaggagatttgccccgcaat 94
>RF00445;mir-399;AC160628.37/72380-72494 3880:Medicago truncatula
(barrel medic)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 79 tctgccaaaggagatttgcccagc 102
||||||||||||||||||||||||
Sbjct: 83 tctgccaaaggagatttgcccagc 106
>RF00445;mir-399;CAAP02003005.1/34979-35094 29760:Vitis vinifera
Length = 116
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 ctctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||||| |||||
Sbjct: 83 ctctgccaaaggagatttgcccggcaat 110
>RF00445;mir-399;AACV01003694.1/9714-9596 39947:Oryza sativa
Japonica Group
Length = 119
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 79 tctgccaaaggagatttgcccagc 102
||||||||||||||||||||||||
Sbjct: 87 tctgccaaaggagatttgcccagc 110
>RF00445;mir-399;EU626442.1/66161-66296 29730:Gossypium raimondii
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||| |||||
Sbjct: 105 ctgccaaaggagatttgccccgcaat 130
>RF00445;mir-399;AY632360.1/45897-46033 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||| |||||
Sbjct: 106 ctgccaaaggagatttgccccgcaat 131
>RF00445;mir-399;AY632359.1/44840-44976 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||| |||||
Sbjct: 106 ctgccaaaggagatttgccccgcaat 131
>RF00445;mir-399;EU626443.1/56309-56427 47615:Gossypioides kirkii
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||| |||||
Sbjct: 88 ctgccaaaggagatttgccccgcaat 113
>RF00445;mir-399;ABIM01002716.1/17825-17941 3649:Carica papaya
(papaya)
Length = 117
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccag 101
||||||||||||||||||||||
Sbjct: 86 ctgccaaaggagatttgcccag 107
>RF00445;mir-399;ABIM01002717.1/16187-16280 3649:Carica papaya
(papaya)
Length = 94
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||| |||||
Sbjct: 63 ctgccaaaggagatttgcccggcaat 88
>RF00445;mir-399;ABIM01002717.1/22515-22407 3649:Carica papaya
(papaya)
Length = 109
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||| |||||
Sbjct: 78 ctgccaaaggagatttgcccggcaat 103
>RF00445;mir-399;AC004481.3/15484-15601 3702:Arabidopsis thaliana
(thale cress)
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 78 ctctgccaaaggagatttgccc 99
||||||||||||||||||||||
Sbjct: 85 ctctgccaaaggagatttgccc 106
>RF00445;mir-399;AARH01002119.1/17334-17454 3694:Populus trichocarpa
Length = 121
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||| |||||
Sbjct: 90 ctgccaaaggagatttgccccgcaat 115
>RF00445;mir-399;AASG02001979.1/7364-7257 3988:Ricinus communis
(castor bean)
Length = 108
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
|||||||||||||||||||| |||||
Sbjct: 77 ctgccaaaggagatttgccccgcaat 102
>RF00445;mir-399;AAAA02017707.1/11015-10916 39946:Oryza sativa
Indica Group
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
||||||||||||| ||||||||||||
Sbjct: 69 ctgccaaaggagacttgcccagcaat 94
>RF00445;mir-399;AC108499.3/125908-126006 39947:Oryza sativa
Japonica Group
Length = 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 ctgccaaaggagatttgcccagcaat 105
||||||||||||| ||||||||||||
Sbjct: 68 ctgccaaaggagacttgcccagcaat 93
