miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54495_sbi-miR399g:pmrd
Length = 125
Score = 230 bits (116), Expect = 2e-61
Identities = 122/125 (97%)
Strand = Plus / Plus
Query: 1 ccagatgtgcacttgcattgctgggcaacttctcctttggcagatgcgcaatgtgctccg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
Sbjct: 1 ccagatgtgcacttgcattgctgggcaacttctcctttggcagatgngcaatgngctcng 60
Query: 61 accctggggcttcttccgcgcctactgccaaaggaaatttgccccggaattcacctgcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 accctggggcttcttccgcgcctactgccaaaggaaatttgccccggaattcacctgcac 120
Query: 121 agcca 125
|||||
Sbjct: 121 agcca 125
>55096_zma-miR399f:pmrd
Length = 105
Score = 75.8 bits (38), Expect = 7e-15
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 4 gatgtgcacttgcattgctgggcaacttctcctttggcagatgcgc 49
||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 4 gatgtgcacctgcatttctgggcaacttctcctttggcagatgcgc 49
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 85 ctgccaaaggaaatttgccccggaattcacctgcaca 121
||||||||||||||||||||||||||||| |||||||
Sbjct: 65 ctgccaaaggaaatttgccccggaattcatctgcaca 101
>48974_osa-miR399k:pmrd
Length = 106
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 82 ctactgccaaaggaaatttgccccggaattca 113
||||||||||||||||||||||||||||||||
Sbjct: 72 ctactgccaaaggaaatttgccccggaattca 103
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 14 tgcattgctgggcaacttctcctttggcagatg 46
||||||||||||||| || ||||||||||||||
Sbjct: 4 tgcattgctgggcaagttgtcctttggcagatg 36
>55097_zma-miR399g:pmrd
Length = 66
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 21 ctgggcaacttctcctttggcagatgcgc 49
|||||||||||||||||||||||||||||
Sbjct: 1 ctgggcaacttctcctttggcagatgcgc 29
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 ctgccaaaggaaatttgccccg 106
||||||||||||||||||||||
Sbjct: 45 ctgccaaaggaaatttgccccg 66
>51747_ptc-miR399a:pmrd
Length = 120
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 85 ctgccaaaggaaatttgccccggaattca 113
||||||||||| |||||||||| ||||||
Sbjct: 90 ctgccaaaggagatttgccccgcaattca 118
>47018_ath-miR399d:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 85 ctgccaaaggaaatttgccccggaattca 113
||||||||||| |||||||||| ||||||
Sbjct: 69 ctgccaaaggagatttgccccgcaattca 97
>47535_ath-miRf10435-akr:pmrd
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 85 ctgccaaaggaaatttgccccggaattc 112
||||||||||| |||||||||| |||||
Sbjct: 65 ctgccaaaggagatttgccccgcaattc 92
